Lactobacillus amylovorus subsp. amylovorus B-4540 is an anaerobe, mesophilic, Gram-positive prokaryote that produces lactate and was isolated from cattle waste-corn fermentation.
lactate production Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Lactobacillaceae |
| Genus Lactobacillus |
| Species Lactobacillus amylovorus subsp. amylovorus |
| Full scientific name Lactobacillus amylovorus subsp. amylovorus (Nakamura 1981) Yamane et al. 2024 |
| BacDive ID | Other strains from Lactobacillus amylovorus subsp. amylovorus (3) | Type strain |
|---|---|---|
| 6414 | L. amylovorus subsp. amylovorus B-4542, CCUG 27202, DSM 20532, ATCC 33622, ... | |
| 6415 | L. amylovorus subsp. amylovorus H 27a, DSM 20552, CIP 104566, JCM 2125, KCTC ... | |
| 158985 | L. amylovorus subsp. amylovorus Bifido-178-WT-3C, DSM 107288 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 8898 | MRS MEDIUM (DSMZ Medium 11) | Medium recipe at MediaDive | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water | ||
| 40528 | MEDIUM 40- for Lactobacillus and Leuconostoc | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |||
| 116364 | CIP Medium 40 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125438 | 90.562 |
| 8898 | CompoundDL lactic acid |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 8898 | A11.31 | A4alpha L-Lys-D-Asp |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | + | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 116364 | 17632 ChEBI | nitrate | - | reduction | |
| 116364 | 17632 ChEBI | nitrate | + | respiration | |
| 116364 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | + | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 116364 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 116364 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 116364 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116364 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68382 | valine arylamidase | - | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||
| @ref | 48682 | ||||||||||||||||||||||||||||||
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|||||||||||||||||||||||||||||||
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | - | + | + | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | |
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | - | + | + | - | - | - | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | |
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | +/- | + | +/- | + | + | - | - | +/- | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | |
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | + | + | + | + | + | - | + | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | |
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | + | + | + | + | + | - | - | + | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | |
| 8898 | - | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | +/- | + | + | + | + | - | - | - | + | - | - | - | + | + | - | + | - | - | - | - | - | - | - | - | - | - | |
| 116364 | not determinedn.d. | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | +/- | + | +/- | +/- | + | +/- | + | + | - | - | +/- | + | - | - | - | + | + | - | + | +/- | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Engineered | #Waste | #Solid waste | |
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
Global distribution of 16S sequence LC064891 (>99% sequence identity) for Lactobacillus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM270637v1 assembly for Lactobacillus amylovorus DSM 20531 | complete | 1423723 | 92.97 | ||||
| 67770 | ASM143398v1 assembly for Lactobacillus amylovorus DSM 20531 | scaffold | 1423723 | 48.72 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Lactobacillus amylovorus 16S ribosomal RNA gene, partial sequence | AF133264 | 501 | 1604 | ||
| 20218 | Lactobacillus amylovorus ATCC 33620 16S ribosomal RNA gene, partial sequence | AF429495 | 504 | 1604 | ||
| 20218 | Lactobacillus amylovorus strain ATCC 33620 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF429582 | 520 | 1604 | ||
| 20218 | Lactobacillus amylovorus partial 16S rRNA gene, type strain DSM 20531T | FR683089 | 1516 | 1604 | ||
| 20218 | Lactobacillus amylovorus strain DSM 20531 16S ribosomal RNA gene, partial sequence | AY944408 | 1504 | 1604 | ||
| 20218 | Lactobacillus amylovorus strain DSM 20531 16S ribosomal RNA gene, partial sequence | EF468092 | 628 | 1604 | ||
| 20218 | Lactobacillus amylovorus 16S ribosomal RNA | M58805 | 1512 | 1604 | ||
| 20218 | Lactobacillus amylovorus gene for 16S rRNA, partial sequence, strain: JCM 1126 | AB289031 | 702 | 1604 | ||
| 20218 | Lactobacillus amylovorus 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence | AF182732 | 660 | 1604 | ||
| 67770 | Lactobacillus amylovorus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1126 | LC064891 | 1463 | 1423723 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 84.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 81.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 77.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 85.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 93.44 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 68.21 | no |
| 125438 | aerobic | aerobicⓘ | no | 98.03 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 90.56 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 92.50 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Transcriptome | Transcriptome and microbiota analysis reveal differences in the cecum of weaning pigs in response to different dietary crude protein levels. | Yu YH, Chen SB, Wang HT, Lin CS, Dybus A, Hukowska-Szematowicz B, Li YH. | Anim Biosci | 10.5713/ab.25.0135 | 2025 | |
| Pathogenicity | Dietary Glycerol Monolaurate Effect on Growth Performance, Intestinal Barrier Function, and Gut Microbiota in Weaned Piglets Challenged by Lipopolysaccharide. | Wang H, Ma R, Qi R, Liu Z, Li Y, Wu X, Zhao C, Ma Q, Zhan K. | Animals (Basel) | 10.3390/ani15223263 | 2025 | |
| Draft genome of Lactobacillus amylovorus KSAU with probiotic potential isolated from the gastrointestinal tract of industrial pigs. | Lysenko YA, Milovanov AV, Kopyltsov SV, Gahurova D, Elisiutikova AV. | Microbiol Resour Announc | 10.1128/mra.00577-24 | 2025 | ||
| Probiotic bacteria of wild boar origin intended for piglets - An in vitro study. | Kostovova I, Kavanova K, Moravkova M, Gebauer J, Leva L, Vicenova M, Babak V, Faldyna M, Crhanova M. | Vet Med (Praha) | 10.17221/35/2024-vetmed | 2024 | ||
| In vitro characterization of lactic acid bacteria and bifidobacteria from wild and domestic pigs: probiotic potential for post-weaning piglets. | Kavanova K, Kostovova I, Moravkova M, Kubasova T, Crhanova M. | BMC Microbiol | 10.1186/s12866-024-03711-9 | 2025 | ||
| Phenotype | Long-read, multi-amplicon sequencing to explore genetic diversity associated with starch degrading phenotypes in amylolytic Lactobacillaceae. | Olivier SA, Bull MK, Bowman JP, Ross T, Chapman B. | Front Microbiol | 10.3389/fmicb.2025.1548052 | 2025 | |
| Whole-Genome Sequencing of Pig Gut Lactobacillus amylovorus CICC 6090. | Yin Y, Li Z, Chen H. | Microbiol Resour Announc | 10.1128/mra.01197-22 | 2023 | ||
| Susceptibility of Lactobacillaceae Strains to Aminoglycoside Antibiotics in the Light of EFSA Guidelines. | Dec M, Herman-Ostrzyzek K, Zomer A, Urban-Chmiel R. | Life (Basel) | 10.3390/life15050732 | 2025 | ||
| Lactobacillus strains from sows improve swine appetite by reducing the pro-inflammatory cytokine concentrations | Li S, Zheng J, Zhao Y, He J, Liu H, Zhong W, Huang Y, Li Z, Yang M, Zhao X, Feng B, Che L, Fang Z, Li J, Xu S, Lin Y, Jiang X, Hua L, Zhuo Y, Wu D. | Anim Nutr | 2025 | |||
| Antibiotic Susceptibility, Resistance Gene Determinants and Corresponding Genomic Regions in Lactobacillus amylovorus Isolates Derived from Wild Boars and Domestic Pigs. | Moravkova M, Kostovova I, Kavanova K, Pechar R, Stanek S, Brychta A, Zeman M, Kubasova T. | Microorganisms | 10.3390/microorganisms11010103 | 2022 | ||
| Molecular Identification and Selection of Probiotic Strains Able to Reduce the Serum TMAO Level in Mice Challenged with Choline. | Ramireddy L, Tsen HY, Chiang YC, Hung CY, Wu SR, Young SL, Lin JS, Huang CH, Chiu SH, Chen CC, Chen CC. | Foods | 10.3390/foods10122931 | 2021 | ||
| Specificity of the AMP-6000 Method for Enumerating Clostridium Endospores in Milk. | Burtscher J, Rudavsky T, Zitz U, Domig KJ. | Foods | 10.3390/foods13081192 | 2024 | ||
| Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products. | Moser A, Wuthrich D, Bruggmann R, Eugster-Meier E, Meile L, Irmler S. | Front Microbiol | 10.3389/fmicb.2017.01380 | 2017 | ||
| Metabolism | Hydrolytic fate of deoxynivalenol-3-glucoside during digestion. | Berthiller F, Krska R, Domig KJ, Kneifel W, Juge N, Schuhmacher R, Adam G. | Toxicol Lett | 10.1016/j.toxlet.2011.08.006 | 2011 | |
| Metabolism | Intestinal integrity and Akkermansia muciniphila, a mucin-degrading member of the intestinal microbiota present in infants, adults, and the elderly. | Collado MC, Derrien M, Isolauri E, de Vos WM, Salminen S. | Appl Environ Microbiol | 10.1128/aem.01477-07 | 2007 | |
| Metabolism | Characterization and identification of Pediococcus species isolated from forage crops and their application for silage preparation. | Cai Y, Kumai S, Ogawa M, Benno Y, Nakase T. | Appl Environ Microbiol | 10.1128/aem.65.7.2901-2906.1999 | 1999 | |
| Identification of food and nutrient components as predictors of Lactobacillus colonization. | Thompson SC, Ford AL, Moothedan EJ, Stafford LS, Garrett TJ, Dahl WJ, Conesa A, Gonzalez CF, Lorca GL. | Front Nutr | 10.3389/fnut.2023.1118679 | 2023 | ||
| Introducing a bioelectrochemical method for highly selective enumeration of magnetotactic bacteria. | Memarpoor-Yazdi M, Haghighatian S, Doroodmand MM, Derakhshandeh A, Moezzi MS. | Sci Rep | 10.1038/s41598-020-65499-8 | 2020 | ||
| Phylogeny | Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis. | Guan LL, Hagen KE, Tannock GW, Korver DR, Fasenko GM, Allison GE. | Appl Environ Microbiol | 10.1128/aem.69.11.6750-6757.2003 | 2003 | |
| Sustainable Food Systems: The Case of Functional Compounds towards the Development of Clean Label Food Products. | Alexandri M, Kachrimanidou V, Papapostolou H, Papadaki A, Kopsahelis N. | Foods | 10.3390/foods11182796 | 2022 | ||
| Extensive profiling of a complex microbial community by high-throughput sequencing. | Hill JE, Seipp RP, Betts M, Hawkins L, Van Kessel AG, Crosby WL, Hemmingsen SM. | Appl Environ Microbiol | 10.1128/aem.68.6.3055-3066.2002 | 2002 | ||
| Recent Developments in Fermented Cereals on Nutritional Constituents and Potential Health Benefits. | Zhang J, Liu M, Zhao Y, Zhu Y, Bai J, Fan S, Zhu L, Song C, Xiao X. | Foods | 10.3390/foods11152243 | 2022 | ||
| Efficient Secretion and Recombinant Production of a Lactobacillal alpha-amylase in Lactiplantibacillus plantarum WCFS1: Analysis and Comparison of the Secretion Using Different Signal Peptides. | Tran AM, Unban K, Kanpiengjai A, Khanongnuch C, Mathiesen G, Haltrich D, Nguyen TH. | Front Microbiol | 10.3389/fmicb.2021.689413 | 2021 | ||
| Enzymology | Alpha-amylase starch binding domains: cooperative effects of binding to starch granules of multiple tandemly arranged domains. | Guillen D, Santiago M, Linares L, Perez R, Morlon J, Ruiz B, Sanchez S, Rodriguez-Sanoja R. | Appl Environ Microbiol | 10.1128/aem.02628-06 | 2007 | |
| Metabolism | Novel Feruloyl Esterase from Lactobacillus fermentum NRRL B-1932 and Analysis of the Recombinant Enzyme Produced in Escherichia coli. | Liu S, Bischoff KM, Anderson AM, Rich JO. | Appl Environ Microbiol | 10.1128/aem.01029-16 | 2016 | |
| Metabolism | Starch-binding domain affects catalysis in two Lactobacillus alpha-amylases. | Rodriguez-Sanoja R, Ruiz B, Guyot JP, Sanchez S. | Appl Environ Microbiol | 10.1128/aem.71.1.297-302.2005 | 2005 | |
| Adhesion of Lactobacillus amylovorus to Insoluble and Derivatized Cornstarch Granules. | Imam SH, Harry-O'kuru RE. | Appl Environ Microbiol | 10.1128/aem.57.4.1128-1133.1991 | 1991 | ||
| High-throughput metabolic fingerprinting of legume silage fermentations via Fourier transform infrared spectroscopy and chemometrics. | Johnson HE, Broadhurst D, Kell DB, Theodorou MK, Merry RJ, Griffith GW. | Appl Environ Microbiol | 10.1128/aem.70.3.1583-1592.2004 | 2004 | ||
| Metabolism | Development of a high-copy plasmid for enhanced production of recombinant proteins in Leuconostoc citreum. | Son YJ, Ryu AJ, Li L, Han NS, Jeong KJ. | Microb Cell Fact | 10.1186/s12934-015-0400-8 | 2016 | |
| Fermented Cereal-based Products: Nutritional Aspects, Possible Impact on Gut Microbiota and Health Implications. | Tsafrakidou P, Michaelidou AM, G Biliaderis C. | Foods | 10.3390/foods9060734 | 2020 | ||
| Poly-beta-hydroxybutyrate Production from Bread Waste via Sequential Dark Fermentation and Photofermentation. | Bernabo L, Daly G, Mugnai G, Galli V, Corneli E, Granchi L, Adessi A. | Foods | 10.3390/foods14101659 | 2025 | ||
| The Effects of High-Dose Probiotic Supplementation on Immune Activation and Neurocognitive Disorders in People Living with HIV Undergoing Successful Antiretroviral Treatment: The Procog Study. | Vassallo M, Zerlini M, Fabre R, Joly H, Durant J, Makinson A, Mauries A, Capeau J, Fellahi S, Bastard JP, Pradier C, Lebrun-Frenay C. | Pathogens | 10.3390/pathogens14060568 | 2025 | ||
| Identification and Characterization of Antiyeast Organic Acids Produced by Lactiplantibacillus plantarum 3121M0s Derived from Mongolian Traditional Fermented Milk, Airag. | Lijon MB, Matsu-Ura Y, Ukita T, Arakawa K, Miyamoto T. | Microorganisms | 10.3390/microorganisms13092017 | 2025 | ||
| Application of Theiler's murine encephalomyelitis virus in treatment of multiple sclerosis. | Li L, Zhou R, Sun L. | Front Microbiol | 10.3389/fmicb.2024.1415365 | 2024 | ||
| Uptake of Levilactobacillus brevis JCM 1059 by THP-1 Cells via Interaction between SlpB and CAP-1 Promotes Cytokine Production. | Yin T, Zhang X, Iwatani S, Miyanaga K, Yamamoto N. | Microorganisms | 10.3390/microorganisms11020247 | 2023 | ||
| Impact of container type on the microbiome of airag, a Mongolian fermented mare's milk. | Shinoda A, Koga Y, Tsuchiya R, Tserenpurev BO, Battsetseg B, Morinaga Y, Nakayama J. | Biosci Microbiota Food Health | 10.12938/bmfh.2024-023 | 2025 | ||
| Metabolism | Probiotics as Potential Tool to Mitigate Nucleotide Metabolism Alterations Induced by DiNP Dietary Exposure in Danio rerio. | Giommi C, Maradonna F, Ladisa C, Habibi HR, Carnevali O. | Int J Mol Sci | 10.3390/ijms252011151 | 2024 | |
| Probiotic Bactolac alleviates depression-like behaviors by modulating BDNF, NLRP3 and MC4R levels, reducing neuroinflammation and promoting neural repair in rat model. | Isik M, Kose F, Budak O, Ozbayer C, Kaya RK, Aydin S, Kucuk AC, Demirci MA, Doganay S, Bagci C. | Pflugers Arch | 10.1007/s00424-025-03084-6 | 2025 | ||
| Metabolism | In vitro fermentation of prebiotic carbohydrates by intestinal microbiota in the presence of Lactobacillus amylovorus DSM 16998. | Cardarelli HR, Martinez RC, Albrecht S, Schols H, Franco BD, Saad SM, Smidt H. | Benef Microbes | 10.3920/bm2014.0151 | 2016 | |
| In Vitro Co-culture of Bacterial and Mammalian Cells to Investigate Effects of Potential Probiotics on Intestinal Barrier Function. | Purba A, Anderson RC, Ulluwishewa D. | Bio Protoc | 10.21769/bioprotoc.5361 | 2025 | ||
| Lactiplantibacillus (Lactobacillus) plantarum as a Complementary Treatment to Improve Symptomatology in Neurodegenerative Disease: A Systematic Review of Open Access Literature. | Beltran-Velasco AI, Reiriz M, Uceda S, Echeverry-Alzate V. | Int J Mol Sci | 10.3390/ijms25053010 | 2024 | ||
| Metabolism | Mapping knowledge landscapes and research frontiers of gastrointestinal microbiota and bone metabolism: a text-mining study. | Wu H, Sun Z, Guo Q, Li C. | Front Cell Infect Microbiol | 10.3389/fcimb.2024.1407180 | 2024 | |
| Bifidobacterium infantis and Bifidobacterium breve Improve Symptomatology and Neuronal Damage in Neurodegenerative Disease: A Systematic Review. | Reiriz M, Beltran-Velasco AI, Echeverry-Alzate V, Martinez-Miguel E, Gomez-Senent S, Uceda S, Clemente-Suarez VJ. | Nutrients | 10.3390/nu17030391 | 2025 | ||
| Postoperative Ileus after Stimulation with Probiotics before Ileostomy Closure. | Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Gomez-Salgado J, Balongo-Garcia R, Ruiz-Frutos C. | Nutrients | 10.3390/nu13020626 | 2021 | ||
| Lactobacillus plantarum DSM 2648 is a potential probiotic that enhances intestinal barrier function. | Anderson RC, Cookson AL, McNabb WC, Kelly WJ, Roy NC. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2010.02038.x | 2010 | ||
| Factors Associated With Short-Term Eradication of Rectal Colonization by KPC-2 Producing Klebsiella pneumoniae in an Outbreak Setting. | Pellice M, Rodriguez-Nunez O, Rico V, Aguero D, Morata L, Cardozo C, Puerta-Alcalde P, Garcia-Vidal C, Rubio E, Fernandez-Pittol MJ, Vergara A, Pitart C, Marco F, Santana G, Rodriguez-Serna L, Vilella A, Lopez E, Soriano A, Martinez JA, Del Rio A. | Front Microbiol | 10.3389/fmicb.2021.630826 | 2021 | ||
| The Role of Nutraceuticals and Probiotics in Addition to Lifestyle Intervention in the Management of Childhood Obesity-Part 1: Metabolic Changes. | Street ME, Casadei F, Di Bari ER, Ferraboschi F, Montani AG, Shulhai AM, Esposito S. | Nutrients | 10.3390/nu17101630 | 2025 | ||
| Diversion Colitis and Probiotic Stimulation: Effects of Bowel Stimulation Prior to Ileostomy Closure. | Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Rada-Morgades R, Gomez-Salgado J, Ruiz-Frutos C. | Front Med (Lausanne) | 10.3389/fmed.2021.654573 | 2021 | ||
| Serological Biomarkers and Diversion Colitis: Changes after Stimulation with Probiotics. | Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Gomez-Salgado J, Ruiz-Frutos C. | Biomolecules | 10.3390/biom11050684 | 2021 | ||
| Soluble Fraction from Lysate of a High Concentration Multi-Strain Probiotic Formulation Inhibits TGF-beta1-Induced Intestinal Fibrosis on CCD-18Co Cells. | Lombardi F, Augello FR, Palumbo P, Mollsi E, Giuliani M, Cimini AM, Cifone MG, Cinque B. | Nutrients | 10.3390/nu13030882 | 2021 | ||
| Metabolism | Type I/II Interferon in HIV-1-Infected Patients: Expression in Gut Mucosa and in Peripheral Blood Mononuclear Cells and Its Modification upon Probiotic Supplementation. | Pinacchio C, Scheri GC, Statzu M, Santinelli L, Ceccarelli G, Innocenti GP, Vullo V, Antonelli G, Brenchley JM, d'Ettorre G, Scagnolari C. | J Immunol Res | 10.1155/2018/1738676 | 2018 | |
| Antibacterial Effectiveness of Fecal Water and in Vitro Activity of a Multi-Strain Probiotic Formulation against Multi-Drug Resistant Microorganisms. | Oliva A, Miele MC, De Angelis M, Costantini S, Mascellino MT, Mastroianni CM, Vullo V, d'Ettorre G. | Microorganisms | 10.3390/microorganisms8030332 | 2020 | ||
| A randomized double-blind placebo controlled pilot study of probiotics in adolescents with severe obesity. | Verma A, Nelson MT, DePaolo WR, Hampe C, Roth CL. | J Diabetes Metab Disord | 10.1007/s40200-021-00855-7 | 2021 | ||
| Diversion Colitis: Macro and Microscopic Findings after Probiotics Stimulation. | Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Gomez-Salgado J, Rada-Morgades R, Ruiz-Frutos C. | Biology (Basel) | 10.3390/biology10040303 | 2021 | ||
| Multiplexed Quantitative Assessment of the Fate of Taurine and Sulfoquinovose in the Intestinal Microbiome. | Haange SB, Groeger N, Froment J, Rausch T, Burkhardt W, Gonnermann S, Braune A, Blaut M, von Bergen M, Rolle-Kampczyk U. | Metabolites | 10.3390/metabo10110430 | 2020 | ||
| A review of potential microbiome-gut-brain axis mediated neurocognitive conditions in persons living with HIV. | Rich S, Klann E, Bryant V, Richards V, Wijayabahu A, Bryant K, Mai V, Cook R. | Brain Behav Immun Health | 10.1016/j.bbih.2020.100168 | 2020 | ||
| Gut Microbiome as Potential Therapeutics in Multiple Sclerosis. | Zhu W, Dykstra K, Zhang L, Xia Z. | Curr Treat Options Neurol | 10.1007/s11940-021-00693-1 | 2021 | ||
| Pathogenicity | How oral probiotics affect the severity of an experimental model of progressive multiple sclerosis? Bringing commensal bacteria into the neurodegenerative process. | Mestre L, Carrillo-Salinas FJ, Feliu A, Mecha M, Alonso G, Espejo C, Calvo-Barreiro L, Luque-Garcia JL, Estevez H, Villar LM, Guaza C. | Gut Microbes | 10.1080/19490976.2020.1813532 | 2020 | |
| Rapid Calorimetric Detection of Bacterial Contamination: Influence of the Cultivation Technique. | Fricke C, Harms H, Maskow T. | Front Microbiol | 10.3389/fmicb.2019.02530 | 2019 | ||
| Probiotics Differently Affect Gut-Associated Lymphoid Tissue Indolamine-2,3-Dioxygenase mRNA and Cerebrospinal Fluid Neopterin Levels in Antiretroviral-Treated HIV-1 Infected Patients: A Pilot Study. | Scagnolari C, Corano Scheri G, Selvaggi C, Schietroma I, Najafi Fard S, Mastrangelo A, Giustini N, Serafino S, Pinacchio C, Pavone P, Fanello G, Ceccarelli G, Vullo V, d'Ettorre G. | Int J Mol Sci | 10.3390/ijms17101639 | 2016 | ||
| High potency multistrain probiotic improves liver histology in non-alcoholic fatty liver disease (NAFLD): a randomised, double-blind, proof of concept study. | Duseja A, Acharya SK, Mehta M, Chhabra S, Shalimar, Rana S, Das A, Dattagupta S, Dhiman RK, Chawla YK. | BMJ Open Gastroenterol | 10.1136/bmjgast-2019-000315 | 2019 | ||
| A Combined Proteomics, Metabolomics and In Vivo Analysis Approach for the Characterization of Probiotics in Large-Scale Production. | Bianchi L, Laghi L, Correani V, Schifano E, Landi C, Uccelletti D, Mattei B. | Biomolecules | 10.3390/biom10010157 | 2020 | ||
| Pathogenicity | A pilot study on the effects of probiotic supplementation on neuropsychological performance and microRNA-29a-c levels in antiretroviral-treated HIV-1-infected patients. | Ceccarelli G, Fratino M, Selvaggi C, Giustini N, Serafino S, Schietroma I, Corano Scheri G, Pavone P, Passavanti G, Alunni Fegatelli D, Mezzaroma I, Antonelli G, Vullo V, Scagnolari C, d'Ettorre G. | Brain Behav | 10.1002/brb3.756 | 2017 | |
| Clinical effectiveness of adding probiotics to a low FODMAP diet: Randomized double-blind placebo-controlled study. | Turan B, Bengi G, Cehreli R, Akpinar H, Soyturk M. | World J Clin Cases | 10.12998/wjcc.v9.i25.7417 | 2021 | ||
| Impact of High-Dose Multi-Strain Probiotic Supplementation on Neurocognitive Performance and Central Nervous System Immune Activation of HIV-1 Infected Individuals. | Ceccarelli G, Brenchley JM, Cavallari EN, Scheri GC, Fratino M, Pinacchio C, Schietroma I, Fard SN, Scagnolari C, Mezzaroma I, Vullo V, d'Ettorre G. | Nutrients | 10.3390/nu9111269 | 2017 | ||
| Evaluating the efficacy of a multistrain probiotic supplementation for prevention of neonatal sepsis in 0-2-month-old low birth weight infants in India-the "ProSPoNS" Study protocol for a phase III, multicentric, randomized, double-blind, placebo-controlled trial. | Sinha AP, Gupta SS, Poluru R, Raut AV, Arora NK, Pandey RM, Sahu AR, Bethou A, Sazawal S, Parida S, Bavdekar A, Saili A, Gaind R, Kapil A, Garg BS, Maliye C, Jain M, Mahajan KS, Dhingra P, Pradhan KC, Kawade AS, Nangia S, Mukherjee A, Rasaily R, Sharma RS, ProSPoNS study Group. | Trials | 10.1186/s13063-021-05193-w | 2021 | ||
| Pathogenicity | A More Robust Gut Microbiota in Calorie-Restricted Mice Is Associated with Attenuated Intestinal Injury Caused by the Chemotherapy Drug Cyclophosphamide. | Liu T, Wu Y, Wang L, Pang X, Zhao L, Yuan H, Zhang C. | mBio | 10.1128/mbio.02903-18 | 2019 | |
| Effect of probiotic treatment on the clinical course, intestinal microbiome, and toxigenic Clostridium perfringens in dogs with acute hemorrhagic diarrhea. | Ziese AL, Suchodolski JS, Hartmann K, Busch K, Anderson A, Sarwar F, Sindern N, Unterer S. | PLoS One | 10.1371/journal.pone.0204691 | 2018 | ||
| Association of germ-free mice with a simplified human intestinal microbiota results in a shortened intestine. | Slezak K, Krupova Z, Rabot S, Loh G, Levenez F, Descamps A, Lepage P, Dore J, Bellier S, Blaut M. | Gut Microbes | 10.4161/gmic.28203 | 2014 | ||
| EPSP of L. casei BL23 Protected against the Infection Caused by Aeromonas veronii via Enhancement of Immune Response in Zebrafish. | Qin C, Zhang Z, Wang Y, Li S, Ran C, Hu J, Xie Y, Li W, Zhou Z. | Front Microbiol | 10.3389/fmicb.2017.02406 | 2017 | ||
| Effects of probiotics (Vivomixx®) in obese pregnant women and their newborn: study protocol for a randomized controlled trial. | Halkjaer SI, Nilas L, Carlsen EM, Cortes D, Halldorsson TI, Olsen SF, Pedersen AE, Krogfelt KA, Petersen AM. | Trials | 10.1186/s13063-016-1617-5 | 2016 | ||
| Metabolism | Host-probiotic interaction: new insight into the role of the endocannabinoid system by in vivo and ex vivo approaches. | Gioacchini G, Rossi G, Carnevali O. | Sci Rep | 10.1038/s41598-017-01322-1 | 2017 | |
| Metabolism | Identification of and hydrogen peroxide production by fecal and vaginal lactobacilli isolated from Japanese women and newborn infants. | Song YL, Kato N, Matsumiya Y, Liu CX, Kato H, Watanabe K. | J Clin Microbiol | 10.1128/jcm.37.9.3062-3064.1999 | 1999 | |
| Pathogenicity | Manipulation of Gut Microbiota Influences Immune Responses, Axon Preservation, and Motor Disability in a Model of Progressive Multiple Sclerosis. | Mestre L, Carrillo-Salinas FJ, Mecha M, Feliu A, Espejo C, Alvarez-Cermeno JC, Villar LM, Guaza C. | Front Immunol | 10.3389/fimmu.2019.01374 | 2019 | |
| The Effectiveness of Probiotics in the Treatment of Inflammatory Bowel Disease (IBD)-A Critical Review. | Jakubczyk D, Leszczynska K, Gorska S. | Nutrients | 10.3390/nu12071973 | 2020 | ||
| The Evaluation of the Effects of Two Probiotic Strains on the Oral Ecosystem: A Randomized Clinical Trial. | Volgenant CMC, van der Waal SV, Brandt BW, Buijs MJ, van der Veen MH, Rosema NAM, Fiebich BL, Rose T, Schmitter T, Gajfulin M, Crielaard W, Zaura E. | Front Oral Health | 10.3389/froh.2022.825017 | 2022 | ||
| Randomized, controlled trial evaluating the effect of multi-strain probiotic on the mucosal microbiota in canine idiopathic inflammatory bowel disease. | White R, Atherly T, Guard B, Rossi G, Wang C, Mosher C, Webb C, Hill S, Ackermann M, Sciabarra P, Allenspach K, Suchodolski J, Jergens AE. | Gut Microbes | 10.1080/19490976.2017.1334754 | 2017 | ||
| Phylogeny | Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny. | Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R. | Appl Environ Microbiol | 10.1128/aem.70.5.3110-3121.2004 | 2004 | |
| Phylogeny | Rapid differentiation and in situ detection of 16 sourdough lactobacillus species by multiplex PCR. | Settanni L, van Sinderen D, Rossi J, Corsetti A. | Appl Environ Microbiol | 10.1128/aem.71.6.3049-3059.2005 | 2005 | |
| Metabolism | Structural and functional differences in two cyclic bacteriocins with the same sequences produced by lactobacilli. | Kawai Y, Ishii Y, Arakawa K, Uemura K, Saitoh B, Nishimura J, Kitazawa H, Yamazaki Y, Tateno Y, Itoh T, Saito T. | Appl Environ Microbiol | 10.1128/aem.70.5.2906-2911.2004 | 2004 | |
| Probiotics for the prevention of pediatric antibiotic-associated diarrhea. | Guo Q, Goldenberg JZ, Humphrey C, El Dib R, Johnston BC. | Cochrane Database Syst Rev | 10.1002/14651858.cd004827.pub5 | 2019 | ||
| Metabolism | Production of lactate and acetate by Lactobacillus coryniformis subsp. torquens DSM 20004(T) in comparison with Lactobacillus amylovorus DSM 20531(T). | Slavica A, Trontel A, Jelovac N, Kosovec Z, Santek B, Novak S | J Biotechnol | 10.1016/j.jbiotec.2015.01.014 | 2015 | |
| Biotechnology | Application of Lactobacillus amylovorus DSM19280 in gluten-free sourdough bread to improve the microbial shelf life. | Axel C, Rocker B, Brosnan B, Zannini E, Furey A, Coffey A, Arendt EK | Food Microbiol | 10.1016/j.fm.2014.10.005 | 2014 | |
| Enzymology | Lactobacillus amylovorus DSM 19280 as a novel food-grade antifungal agent for bakery products. | Ryan LA, Zannini E, Dal Bello F, Pawlowska A, Koehler P, Arendt EK | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2011.02.036 | 2011 | |
| Metabolism | Characterization of a mutant from Lactobacillus amylovorus JCM 1126(T) with improved utilization of sucrose. | Oda Y, Ito M | Curr Microbiol | 10.1007/s002840010156 | 2000 | |
| Enzymology | Functional characterization of probiotic surface layer protein-carrying Lactobacillus amylovorus strains. | Hynonen U, Kant R, Lahteinen T, Pietila TE, Beganovic J, Smidt H, Uroic K, Avall-Jaaskelainen S, Palva A | BMC Microbiol | 10.1186/1471-2180-14-199 | 2014 | |
| Metabolism | The novel porcine Lactobacillus sobrius strain protects intestinal cells from enterotoxigenic Escherichia coli K88 infection and prevents membrane barrier damage. | Roselli M, Finamore A, Britti MS, Konstantinov SR, Smidt H, de Vos WM, Mengheri E | J Nutr | 10.1093/jn/137.12.2709 | 2007 | |
| Phylogeny | Proposal of Lactobacillus amylovorus subsp. animalis subsp. nov. and an emended description of Lactobacillus amylovorus. | Yamane K, Tanizawa Y, Kobayashi H, Kamizono T, Kojima Y, Takagi H, Tohno M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006517 | 2024 |
| #8898 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20531 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40528 | ; Curators of the CIP; |
| #48682 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 27201 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #116364 | Collection of Institut Pasteur ; Curators of the CIP; CIP 102989 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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