Name: Lactobacillus amylovorus OTU-171-1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6412

Type strain:

Species: Lactobacillus amylovorus

Strain Designation: OTU-171-1

Culture col. no.: DSM 16698, CIP 109151, NCCB 100067

Strain history: CIP <- 2006, DSMZ, Lactobacillus sobrius

NCBI tax ID(s): 695563 (strain), 1604 (species)

SI-ID 289863

DSM 16698, NCCB 100067, CIP 109151

Special Collections

Other strains from Lactobacillus amylovorus

Section

Lactobacillus amylovorus OTU-171-1 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from feces, piglet intestine.

Gram-positive
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus amylovorus**
	Full Scientific Name (LPSN)	Lactobacillus amylovorus Nakamura 1981

Synonym

Lactobacillus sobrius

Information on morphological and physiological properties Morphology

[Ref.: #31422]	Gram stain	positive
[Ref.: #116363]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %92.175

[Ref.: #31422]	Cell length	02-20 µm

[Ref.: #31422]	Cell shape	rod-shaped
[Ref.: #116363]	Cell shape	rod-shaped

[Ref.: #31422]	Motility	no
[Ref.: #116363]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93

[Ref.: #31422]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6572]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6572]

Culture medium growth

[Ref.: #6572]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6572]

Culture medium composition

expand / minimize

[Ref.: #34980]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #34980]

Culture medium growth

[Ref.: #34980]

Culture medium composition

expand / minimize

[Ref.: #116363]

Culture medium

CIP Medium 40

[Ref.: #116363]

Culture medium growth

[Ref.: #116363]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6572]	growth	37 °C
[Ref.: #31422]	growth	37 °C
[Ref.: #31422]	optimum	37 °C
[Ref.: #34980]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31422]			optimum	7
[Ref.: #31422]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6572]	Oxygen tolerance	microaerophile
[Ref.: #31422]	Oxygen tolerance	facultative anaerobe
[Ref.: #116363]	Oxygen tolerance	facultative anaerobe

[Ref.: #31422]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %90.549
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #31422]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	glycogen ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31422]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31422]	mannitol ChEBI	+	carbon source
[Ref.: #31422]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #116363]	nitrate ChEBI	-	reduction
[Ref.: #116363]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31422]	ribose ChEBI	+	carbon source
[Ref.: #31422]	salicin ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31422]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31422]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116363]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116363]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116363]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116363]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6572]	14347	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	-	+/-	-	-	-	+	-	-	+	+/-	+	+	+	+	+	+	-	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-
[Ref.: #116363]	11483	not determinedn.d.	-	-	-	-	-	-	-	-	-	+	+	+	+/-	-	-	-	-	-	-	-	-	+	-	-	-	-	+	+	+	-	+	+	-	-	+	+	-	-	+/-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116363]	11684	-	+	-	-	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6572]	Sample type/isolated from	feces, piglet intestine
[Ref.: #6572]	Country	Netherlands
[Ref.: #6572]	Country ISO 3 Code	NLD
[Ref.: #6572]	Continent	Europe

[Ref.: #116363]	Sample type/isolated from	Animal, Pig intestine
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY700063 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	3832
Soil Samples	2681
Animal Samples	57081
Plant Samples	990
Total Samples	64584

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6572]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116363]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6572]	Lactobacillus sobrius strain OTU171-001 16S ribosomal RNA gene, partial sequence	AY700063	1565	GenBank ENA	1604 tax ID
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468037	645	GenBank ENA	434132 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468038	635	GenBank ENA	434142 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468039	660	GenBank ENA	434153 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468040	616	GenBank ENA	434164 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468041	660	GenBank ENA	434175 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468042	415	GenBank ENA	434181 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468043	412	GenBank ENA	434184 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468044	611	GenBank ENA	434182 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468045	629	GenBank ENA	434183 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468046	427	GenBank ENA	434133 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468047	548	GenBank ENA	434134 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468048	616	GenBank ENA	434135 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468049	493	GenBank ENA	434136 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468050	480	GenBank ENA	434137 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468051	422	GenBank ENA	434138 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468052	538	GenBank ENA	434185 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468053	616	GenBank ENA	434139 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468054	619	GenBank ENA	434140 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468055	631	GenBank ENA	434141 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468056	616	GenBank ENA	434143 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468057	564	GenBank ENA	434144 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468058	514	GenBank ENA	434145 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468059	526	GenBank ENA	434146 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468060	549	GenBank ENA	434147 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468061	578	GenBank ENA	434148 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468062	564	GenBank ENA	434149 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468063	567	GenBank ENA	434150 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468064	637	GenBank ENA	434151 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468065	467	GenBank ENA	434152 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468066	517	GenBank ENA	434154 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468067	499	GenBank ENA	434155 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468068	575	GenBank ENA	434156 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468069	430	GenBank ENA	434157 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468070	633	GenBank ENA	434158 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468071	477	GenBank ENA	434159 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468072	399	GenBank ENA	434160 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468073	426	GenBank ENA	434161 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468074	459	GenBank ENA	434162 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468075	549	GenBank ENA	434163 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468076	538	GenBank ENA	434165 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468077	455	GenBank ENA	434166 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468078	434	GenBank ENA	434167 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468079	456	GenBank ENA	434168 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468080	474	GenBank ENA	434169 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468081	542	GenBank ENA	434170 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468082	414	GenBank ENA	434171 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468083	342	GenBank ENA	434172 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468084	540	GenBank ENA	434173 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468085	543	GenBank ENA	434174 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468086	478	GenBank ENA	434176 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468087	503	GenBank ENA	434177 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468088	515	GenBank ENA	434178 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468089	514	GenBank ENA	434179 tax ID	*
[Ref.: #124043]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence.	EF468090	376	GenBank ENA	434180 tax ID	*
[Ref.: #124043]	Lactobacillus amylovorus DSM 16698 gene for 16S ribosomal RNA, partial sequence.	LC771964	1486	GenBank ENA	1604 tax ID	*
[Ref.: #20218]	Lactobacillus sobrius strain DSM 16698 16S ribosomal RNA gene, partial sequence	EF468103	634	GenBank ENA	1604 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lactobacillus amylovorus DSM 16698	GCA_001437365	scaffold	GenBank ENA	695563 tax ID	*
[Ref.: #66792]	Lactobacillus amylovorus DSM 16698	695563.3	wgs	PATRIC	695563 tax ID	*
[Ref.: #66792]	Lactobacillus amylovorus DSM 16698	2700989266	draft	JGI IMG/M	695563 tax ID	*

[Ref.: #6572]	GC-content	35 mol%
[Ref.: #31422]	GC-content	35-36 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus amylovorus DSM 16698 DSM 16698 NCBI: GCA_001437365.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus amylovorus DSM 16698 DSM 16698 NCBI: GCA_001437365.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.175	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	74.254	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	97.481	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.549	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	93	yes

Availability in culture collections External links

[Ref.: #6572]

Culture collection no.

DSM 16698, CIP 109151, NCCB 100067

[Ref.: #75886]

SI-ID 289863

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	In vitro fermentation of prebiotic carbohydrates by intestinal microbiota in the presence of Lactobacillus amylovorus DSM 16998.	Cardarelli HR, Martinez RC, Albrecht S, Schols H, Franco BD, Saad SM, Smidt H	Benef Microbes	10.3920/BM2014.0151	2015	*
Enzymology	Functional characterization of probiotic surface layer protein-carrying Lactobacillus amylovorus strains.	Hynonen U, Kant R, Lahteinen T, Pietila TE, Beganovic J, Smidt H, Uroic K, Avall-Jaaskelainen S, Palva A	BMC Microbiol	10.1186/1471-2180-14-199	2014	*
Metabolism	Lactobacillus amylovorus inhibits the TLR4 inflammatory signaling triggered by enterotoxigenic Escherichia coli via modulation of the negative regulators and involvement of TLR2 in intestinal Caco-2 cells and pig explants.	Finamore A, Roselli M, Imbinto A, Seeboth J, Oswald IP, Mengheri E	PLoS One	10.1371/journal.pone.0094891	2014	*
Enzymology	Effect of galactooligosaccharides and Bifidobacterium animalis Bb-12 on growth of Lactobacillus amylovorus DSM 16698, microbial community structure, and metabolite production in an in vitro colonic model set up with human or pig microbiota.	Martinez RC, Cardarelli HR, Borst W, Albrecht S, Schols H, Gutierrez OP, Maathuis AJ, de Melo Franco BD, De Martinis EC, Zoetendal EG, Venema K, Saad SM, Smidt H	FEMS Microbiol Ecol	10.1111/1574-6941.12041	2012	*
Pathogenicity	In vitro evaluation of gastrointestinal survival of Lactobacillus amylovorus DSM 16698 alone and combined with galactooligosaccharides, milk and/or Bifidobacterium animalis subsp. lactis Bb-12.	Martinez RC, Aynaou AE, Albrecht S, Schols HA, De Martinis EC, Zoetendal EG, Venema K, Saad SM, Smidt H	Int J Food Microbiol	10.1016/j.ijfoodmicro.2011.06.010	2011	*
Enzymology	Feeding of Lactobacillus sobrius reduces Escherichia coli F4 levels in the gut and promotes growth of infected piglets.	Konstantinov SR, Smidt H, Akkermans AD, Casini L, Trevisi P, Mazzoni M, De Filippi S, Bosi P, de Vos WM	FEMS Microbiol Ecol	10.1111/j.1574-6941.2008.00517.x	2008	*
Phylogeny	Lactobacillus sobrius Konstantinov et al. 2006 is a later synonym of Lactobacillus amylovorus Nakamura 1981.	Jakava-Viljanen M, Murros A, Palva A, Bjorkroth KJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65432-0	2008	*
Metabolism	The novel porcine Lactobacillus sobrius strain protects intestinal cells from enterotoxigenic Escherichia coli K88 infection and prevents membrane barrier damage.	Roselli M, Finamore A, Britti MS, Konstantinov SR, Smidt H, de Vos WM, Mengheri E	J Nutr	10.1093/jn/137.12.2709	2007	*
Phylogeny	Lactobacillus sobrius sp. nov., abundant in the intestine of weaning piglets.	Konstantinov SR, Poznanski E, Fuentes S, Akkermans AD, Smidt H, de Vos WM	Int J Syst Evol Microbiol	10.1099/ijs.0.63508-0	2006	*
	Differential protection by cell wall components of Lactobacillus amylovorus DSM 16698(T)against alterations of membrane barrier and NF-kB activation induced by enterotoxigenic F4(+) Escherichia coli on intestinal cells.	Roselli M, Finamore A, Hynonen U, Palva A, Mengheri E	BMC Microbiol	10.1186/s12866-016-0847-8	2016	*

References

#6572

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16698

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31422

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27729 (see below)

#34980 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75886

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID289863.1 )

#116363 Collection of Institut Pasteur ; Curators of the CIP; CIP 109151

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#27729

IJSEM 29 2006 ( DOI 10.1099/ijs.0.63508-0 , PubMed 16403862 )

* These data were automatically processed and therefore are not curated

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Lactobacillus amylovorus DSM 16698 DSM 16698

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