Name: Shewanella putrefaciens 180
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14059

Type strain:

Species: Shewanella putrefaciens

Strain Designation: 180, 3353

Culture col. no.: DSM 50426, ATCC 8072, NCIB 10472

Strain history: <- ICBP, 3353 <- ATCC <- B.W. Hammer, 180 (Pseudomonas putrefaciens)

NCBI tax ID(s): 24 (species)

SI-ID 34914

ATCC 8072, DSM 50426, NCIB 10472, JCM 9295, NCIMB 10472, IFO 3909, NBRC 3909

Other strains from Shewanella putrefaciens

Section

Shewanella putrefaciens 180 is a mesophilic human pathogen that was isolated from butter.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella putrefaciens**
	Full Scientific Name (LPSN)	Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonym

Alteromonas putrefaciens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12719]

Culture medium

ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)

[Ref.: #12719]

Culture medium growth

[Ref.: #12719]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12719]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12719]			growth	30 °C

[Ref.: #12719]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12719]	Sample type/isolated from	butter
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12719]	Pathogenicity (human)	yes
[Ref.: #12719]	Pathogenicity (animal)	yes
[Ref.: #12719]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Shewanella putrefaciens 16S ribosomal RNA gene, partial sequence	U91593	1171	ENA	24 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella putrefaciens DSM 50426	GCA_025397935	contig	GenBank	24 tax ID	*

[Ref.: #12719]

GC-content

47.2 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella putrefaciens DSM 50426 NCBI: GCA_025397935.1
[Ref.: #69480]	motile	yes	94.075	no
[Ref.: #69480]	flagellated	yes	91.044	no
[Ref.: #69480]	gram-positive	no	98.848	no
[Ref.: #69480]	anaerobic	no	94.88	no
[Ref.: #69480]	aerobic	yes	54.392	no
[Ref.: #69480]	halophile	no	70.38	no
[Ref.: #69480]	spore-forming	no	95.658	no
[Ref.: #69480]	glucose-ferment	no	65.565	no
[Ref.: #69480]	thermophile	no	99.595	yes
[Ref.: #69480]	glucose-util	yes	89.617	no

Availability in culture collections External links

[Ref.: #12719]

Culture collection no.

DSM 50426, ATCC 8072, NCIB 10472

[Ref.: #83228]

SI-ID 34914

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens).	Wilkinson SG, Caudwell PF	J Gen Microbiol	10.1099/00221287-118-2-329	1980	*
	Genome collection of Shewanella spp. isolated from spoiled lamb.	Palevich N, Palevich FP, Gardner A, Brightwell G, Mills J	Front Microbiol	10.3389/fmicb.2022.976152	2022	*

References

#12719

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50426

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83228

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID34914.1 )

* These data were automatically processed and therefore are not curated

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Shewanella putrefaciens DSM 50426

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