Shewanella putrefaciens (DSM 6067, ATCC 8071, ICPB 352)

Name: Shewanella putrefaciens (DSM 6067, ATCC 8071, ICPB 352)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14054

Type strain

Strain Designation 95

Culture col. no. DSM 6067 ATCC 8071 ICPB 352 NCIB 10471 CCUG 13452 D 13 more

NCBI tax ID(s) 1236543 24

Special Collections DSMZ CCUG JCM CIP

History <- ATCC <- B.W. Hammer, 95 (Pseudomonas putrefaciens) IAM 1509 <-- ATCC 8071 <-- B. W. Hammer 95. CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France: strain 12-80, Alteromonas putrefaciens <- ATCC <- B.W. Hammer: strain 95, Pseudomonas putrefaciens

Links

Shewanella putrefaciens 95 is an aerobe, Gram-negative, motile human pathogen that was isolated from Butter.

Gram-negative motile rod-shaped aerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 4969

LMG 2268,ATCC 8071,CCUG 13452,CECT 331,IAM 12079,IAM 1509,IFO 3908,NCIB 10471,CCUG 13452 D,DSM 6067,JCM 9294,NCIMB 10471,CCRC 10596,KCTC 2684,CECT 5346,NBRC 3908,CFBP 3033,CFBP 3034,NCTC 12960,BCRC 10596,CCT 0571,KCTC 12458,BCRC 17326,CCRC 17326,CNCTC 5277,JCM 20190,VTT E-95586,CIP 80.40

@ref 20215

Last LPSN update 2026-02-09 11:21:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella putrefaciens

Full scientific name Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonyms (1)

Alteromonas putrefaciens

BacDive ID	Other strains from **Shewanella putrefaciens** (60)	Type strain
14053	S. putrefaciens DSM 1818, ATCC 12099, IAM 1510, NCIB 8786, ...
14055	S. putrefaciens DSM 9451, LMG 2266 t1, NCTC CL256/73
14057	S. putrefaciens DSM 9461, ATCC 8073, IFO 3910, LMG 2369, ...
14058	S. putrefaciens DSM 15988, NCIMB 12202
14059	S. putrefaciens 180, 3353, DSM 50426, ATCC 8072, NCIB 10472
100617	S. putrefaciens STI05050(IMET), W1,
134814	S. putrefaciens CIP 69.30
134830	S. putrefaciens II 1 Ax, CIP 72.4
138495	S. putrefaciens CIP 59.12, NCDO 756, NCIMB 8615
138895	S. putrefaciens CIP 63.53, CCEB 519, JCM 20573, ATCC 19857, ...
141189	S. putrefaciens CCUG 57
141209	S. putrefaciens CCUG 194
141380	S. putrefaciens CCUG 1321
141385	S. putrefaciens CCUG 1327
141642	S. putrefaciens CCUG 4270
141722	S. putrefaciens CCUG 5188
142551	S. putrefaciens CCUG 12946
142552	S. putrefaciens CCUG 12947
142553	S. putrefaciens CCUG 12948
142835	S. putrefaciens CCUG 15258
142927	S. putrefaciens CCUG 15766
142931	S. putrefaciens CCUG 15789
142968	S. putrefaciens CCUG 15951
143370	S. putrefaciens CCUG 18762
143436	S. putrefaciens CCUG 19119
144092	S. putrefaciens CCUG 22946
144093	S. putrefaciens CCUG 22948
146923	S. putrefaciens CCUG 32456 B
147235	S. putrefaciens CCUG 33122
148152	S. putrefaciens CCUG 34907
148929	S. putrefaciens CCUG 36599
148930	S. putrefaciens CCUG 36600
148932	S. putrefaciens CCUG 36602
148966	S. putrefaciens CCUG 36653
148967	S. putrefaciens CCUG 36654
157516	S. putrefaciens IMI 349021
162912	S. putrefaciens JCM 20396, IAM 12089, NRRL B-1002
163016	S. putrefaciens JCM 20940, IAM 13595, LMG 2263, NCTC 10737
163017	S. putrefaciens JCM 20941, IAM 13596
163018	S. putrefaciens JCM 20942, CDC A4186, IAM 13597
163019	S. putrefaciens JCM 20943, CDC A4186, IAM 13598
163020	S. putrefaciens JCM 20944, CDC A7191, IAM 13599
163021	S. putrefaciens JCM 20945, CDC A7310, IAM 13600
163022	S. putrefaciens JCM 20946, CDC A7921, IAM 13601
163023	S. putrefaciens JCM 20947, CDC A7921, IAM 13602
163024	S. putrefaciens JCM 20948, CDC B23, IAM 13603
163025	S. putrefaciens JCM 20949, IAM 13604
163026	S. putrefaciens JCM 20950, IAM 13605
163027	S. putrefaciens JCM 20951, IAM 13606
163028	S. putrefaciens JCM 20952, IAM 13607
163029	S. putrefaciens JCM 20953, IAM 13608
163030	S. putrefaciens JCM 20954, IAM 13609
163031	S. putrefaciens JCM 20955, IAM 13610
163032	S. putrefaciens JCM 20956, IAM 13611
163033	S. putrefaciens JCM 20957, IAM 13612
163034	S. putrefaciens JCM 20958, IAM 13613
163035	S. putrefaciens JCM 20960, IAM 13615, NCTC 10762
163036	S. putrefaciens JCM 20961, IAM 13616, LMG 2267, NCTC 10763
163037	S. putrefaciens JCM 20963, IAM 13618
163038	S. putrefaciens JCM 20964, IAM 13619

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122075	negative	rod-shaped
125439	negative		99.6
125438			90.796
125438	negative		99

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2428	NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (OXOID CM3) (DSMZ Medium 605) Composition: Agar 15.0 g/l NaCl 5.0 g/l Peptone 5.0 g/l Yeast extract 2.0 g/l Lab-Lemco beef extract 1.0 g/l Distilled water
2428	OXOID NUTRIENT BROTH (DSMZ Medium 948)	Medium recipe at MediaDive	Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
37718	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122075	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2428	positive	growth	26
37718	positive	growth	25
45954	positive	growth	30-37
67770	positive	growth	25
122075	positive	growth	25-37
122075	negative	growth	5
122075	negative	growth	41
122075	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
45954	aerobe
122075	obligate aerobe
125439	obligate aerobe	96.9

Spore formation

@ref	Spore formation	Confidence
125439		99.4
125438		93.076

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
122075	17632 ChEBI	nitrate	+	reduction
122075	17632 ChEBI	nitrate	+	respiration
122075	16301 ChEBI	nitrite	+	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
122075	132112 ChEBI	sodium thiosulfate	+	builds gas from
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122075	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122075	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
122075	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122075	caseinase	+	3.4.21.50
122075	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
122075	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122075	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
122075	lipase	+
68382	lipase (C 14)	-		from API zym
122075	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122075	ornithine decarboxylase	+	4.1.1.17
122075	oxidase	+
122075	protease	+
68382	trypsin	+	3.4.21.4	from API zym
122075	tween esterase	-
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122075	-	+	+	+	-	+	+	+	+	+	+	+	-	-	-	-	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122075	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122075	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	+	-	-	+	-	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Dairy product

Isolation

@ref	Sample type
45954	Butter
67770	Butter
122075	Surface of tainted butter

Taxonmaps

69479

Global distribution of 16S sequence X81623 (>99% sequence identity) for Shewanella from Microbeatlas

Aquatic Samples	2
Soil Samples
Animal Samples	4
Plant Samples
Total Samples	6

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
2428			2	Risk group (German classification) According to TRBA 466
122075			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1640632v1 assembly for Shewanella putrefaciens ATCC 8071	complete	GCA_016406325	24.44	8111607417	24	99.17
67770	ASM1464755v1 assembly for Shewanella putrefaciens JCM 20190	scaffold	GCA_014647555	24.42		24	64.39
67770	ASM159132v1 assembly for Shewanella putrefaciens JCM 20190 = NBRC 3908	contig	GCA_001591325	1236543.4	2731957646	1236543	62.01
67770	ASM61500v1 assembly for Shewanella putrefaciens JCM 20190 = NBRC 3908	contig	GCA_000615005	1236543.3	2585427914	1236543	54.97

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Shewanella putrefaciens strain ATCC 8071 16S ribosomal RNA gene, partial sequence	FJ971881	797	24
20218	S.putrefaciens 16S rRNA gene (ATCC 8071)	X82133	1436	24
20218	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014563	374	24
20218	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014564	477	24
20218	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014565	326	24
20218	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014566	794	24
20218	Shewanella putrefaciens strain BCRC 10596 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014567	947	24
20218	Shewanella putrifaciens 16S rRNA	D11190	165	24
20218	Shewanella putrifaciens 16S rRNA	D11239	212	24
20218	Shewanella putrifaciens 16S rRNA	D11288	191	24
20218	S.putrefaciens 16S rRNA gene	X81623	1536	24
20218	Shewanella putrefaciens gene for 16S rRNA, partial sequence, strain: NBRC 3908	AB680167	1433	24
124043	Shewanella putrefaciens strain VTT E-95586 16S ribosomal RNA gene, partial sequence.	KU321263	1477	24

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella putrefaciens strain ATCC 8071
PATRIC: 24.44

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	motility	BacteriaNetⓘ	yes	85.60	no
125439	spore_formation	BacteriaNetⓘ	no	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella putrefaciens ATCC 8071
NCBI: GCA_016406325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.53	yes
125438	aerobic	aerobicⓘ	yes	58.33	yes
125438	spore-forming	spore-formingⓘ	no	93.08	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	90.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole-Genome Sequencing Redefines Shewanella Taxonomy.	Thorell K, Meier-Kolthoff JP, Sjoling A, Martin-Rodriguez AJ.	Front Microbiol	10.3389/fmicb.2019.01861	2019
Biotechnology	Control of biofilm from single and multispecies bacteria associated with food spoilage using metabolite of Streptomyces sp. KP110 and Pseudomonas fluorescens JB 3B.	Halim B, Waturangi DE, Yulandi A.	Sci Rep	10.1038/s41598-025-09259-6	2025
	Efficient genetic manipulation of Shewanella through targeting defense islands.	Ruan Y, Tang H, Cai T, Du X, Liu T, Wang X, Wang P.	Appl Environ Microbiol	10.1128/aem.02499-24	2025
	Microbiological analysis of skin lesions of cod (Gadus morhua) from the southern part of the Baltic Sea.	Pekala-Safinska A, Nadolna-Altyn K, Rozycki M, Pazdzior E, Cencek T, Podolska M.	J Vet Res	10.2478/jvetres-2024-0004	2024
Genetics	Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains.	Wu K, Cheng ZH, Williams E, Turner NT, Ran D, Li H, Zhou X, Guo H, Sung W, Liu DF, Lynch M, Long H.	Genome Biol Evol	10.1093/gbe/evab148	2021
	Shewanella putrefaciens, a rare human pathogen: A review from a clinical perspective.	Muller S, von Bonin S, Schneider R, Kruger M, Quick S, Schrottner P.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1033639	2022
	The Effect of Muicle-Chitosan Edible Coatings on the Physical, Chemical, and Microbiological Quality of Cazon Fish (Mustelus lunulatus) Fillets Stored in Ice.	Cruz-Guzman JA, Garzon-Garcia AM, Ruiz-Cruz S, Marquez-Rios E, Valdez-Hurtado S, Paredes-Quijada GT, Rodriguez-Figueroa JC, Silvas-Garcia MI, Montoya-Camacho N, Ocano-Higuera VM, Canizales-Rodriguez DF, Jimenez-Ruiz EI.	Foods	10.3390/foods14091619	2025
	Phenotypic Diversity and Potential Virulence Factors of the Shewanella Putrefaciens Group Isolated from Freshwater Fish.	Pazdzior E, Pekala-Safinska A, Wasyl D.	J Vet Res	10.2478/jvetres-2019-0046	2019
Metabolism	Screening and quantification of anti-quorum sensing and antibiofilm activity of Actinomycetes isolates against food spoilage biofilm-forming bacteria.	Mulya E, Waturangi DE.	BMC Microbiol	10.1186/s12866-020-02060-7	2021
Metabolism	Quantitative Analysis of Cold Stress Inducing Lipidomic Changes in Shewanella putrefaciens Using UHPLC-ESI-MS/MS.	Gao X, Liu W, Mei J, Xie J.	Molecules	10.3390/molecules24244609	2019
	Synthesis, biological investigation, and in silico studies of 2-aminothiazole sulfonamide derivatives as potential antioxidants.	Worachartcheewan A, Pingaew R, Prachayasittikul V, Apiraksattayakul S, Prachayasittikul S, Ruchirawat S, Prachayasittikul V.	EXCLI J	10.17179/excli2024-7855	2025
	Multifactorial Causes of Chronic Mortality in Juvenile Sturgeon (Huso huso).	Ciulli S, Volpe E, Sirri R, Tura G, Errani F, Zamperin G, Toffan A, Silvi M, Renzi A, Abbadi M, Biasini L, Pretto T, Emmanuele P, Casalini A, Sarli G, Serratore P, Mordenti O, Mandrioli L.	Animals (Basel)	10.3390/ani10101866	2020
	Natural Methoxyphenol Compounds: Antimicrobial Activity against Foodborne Pathogens and Food Spoilage Bacteria, and Role in Antioxidant Processes.	Orlo E, Russo C, Nugnes R, Lavorgna M, Isidori M.	Foods	10.3390/foods10081807	2021
	Antibiofilm properties of bioactive compounds from Actinomycetes against foodborne and fish pathogens.	Miller T, Waturangi DE, Yogiara.	Sci Rep	10.1038/s41598-022-23455-8	2022
Genetics	Genome-guided purification and characterization of polymyxin A1 from Paenibacillus thiaminolyticus SY20: A rarely explored member of polymyxins.	Wu YP, Liu DM, Liang MH, Huang YY, Lin J, Xiao LF.	Front Microbiol	10.3389/fmicb.2022.962507	2022
	Growth and genome-based insights of Fe(III) reduction of the high-temperature and NaCl-tolerant Shewanella xiamenensis from Changqing oilfield of China.	Yang J, Zhao D, Liu T, Zhang S, Wang W, Yan L, Gu JD.	Front Microbiol	10.3389/fmicb.2022.1028030	2022
	Effects of Weak Acids on the Microbiological, Nutritional and Sensory Quality of Baltic Herring (Clupea harengus membras).	Logren N, Hiidenhovi J, Kakko T, Valimaa AL, Makinen S, Rintala N, Mattila P, Yang B, Hopia A.	Foods	10.3390/foods11121717	2022
	Bioactive Properties of Kakadu Plum-Blended Products.	Zhou Y, Phan ADT, Akter S, Bobasa EM, Seididamyeh M, Sivakumar D, Sultanbawa Y.	Molecules	10.3390/molecules28062828	2023
Metabolism	Origin of OXA-181, an emerging carbapenem-hydrolyzing oxacillinase, as a chromosomal gene in Shewanella xiamenensis.	Potron A, Poirel L, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.00681-11	2011
Metabolism	Shewanella decolorationis LDS1 Chromate Resistance.	Lemaire ON, Honore FA, Tempel S, Fortier EM, Leimkuhler S, Mejean V, Iobbi-Nivol C.	Appl Environ Microbiol	10.1128/aem.00777-19	2019
Metabolism	Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1.	Qiu D, Wei H, Tu Q, Yang Y, Xie M, Chen J, Pinkerton MH, Liang Y, He Z, Zhou J.	Appl Environ Microbiol	10.1128/aem.00619-13	2013
	Spongin as a Unique 3D Template for the Development of Functional Iron-Based Composites Using Biomimetic Approach In Vitro.	Kubiak A, Pajewska-Szmyt M, Kotula M, Lesniewski B, Voronkina A, Rahimi P, Falahi S, Heimler K, Rogoll A, Vogt C, Ereskovsky A, Simon P, Langer E, Springer A, Forste M, Charitos A, Joseph Y, Jesionowski T, Ehrlich H.	Mar Drugs	10.3390/md21090460	2023
	Derivatives (halogen, nitro and amino) of 8-hydroxyquinoline with highly potent antimicrobial and antioxidant activities.	Cherdtrakulkiat R, Boonpangrak S, Sinthupoom N, Prachayasittikul S, Ruchirawat S, Prachayasittikul V.	Biochem Biophys Rep	10.1016/j.bbrep.2016.03.014	2016
	New Antimalarial and Antimicrobial Tryptamine Derivatives from the Marine Sponge Fascaplysinopsis reticulata.	Campos PE, Pichon E, Moriou C, Clerc P, Trepos R, Frederich M, De Voogd N, Hellio C, Gauvin-Bialecki A, Al-Mourabit A.	Mar Drugs	10.3390/md17030167	2019
Metabolism	Bioactive Bromotyrosine Derivatives from the Pacific Marine Sponge Suberea clavata (Pulitzer-Finali, 1982).	Moriou C, Lacroix D, Petek S, El-Demerdash A, Trepos R, Leu TM, Florean C, Diederich M, Hellio C, Debitus C, Al-Mourabit A.	Mar Drugs	10.3390/md19030143	2021
Enzymology	Characterization of putative pathogenic Shewanella algae isolated from ballast water.	Ibrahim NNN, Nasir NM, Sahrani FK, Ahmad A, Sairi F.	Vet World	10.14202/vetworld.2021.678-688	2021
	Synthesis of acetamidosulfonamide derivatives with antioxidative and QSAR studies.	Worachartcheewan A, Pisutjaroenpong S, Pingaew R, Prachayasittikul S, Siriwong S, Ruchirawat S, Prachayasittikul V.	EXCLI J	10.17179/excli2021-4590	2022
Enzymology	Detection of food spoilage and pathogenic bacteria based on ligation detection reaction coupled to flow-through hybridization on membranes.	Bohme K, Cremonesi P, Severgnini M, Villa TG, Fernandez-No IC, Barros-Velazquez J, Castiglioni B, Calo-Mata P.	Biomed Res Int	10.1155/2014/156323	2014
	Inactivation of Shewanella putrefaciens by gamma irradiation of red meat and poultry	Thayer DW, Boyd G.	Journal of food safety.	10.1111/j.1745-4565.1996.tb00156.x	1996
Metabolism	Biochemical and pathogenic properties of Shewanella alga and Shewanella putrefaciens.	Khashe S, Janda JM.	J Clin Microbiol	10.1128/jcm.36.3.783-787.1998	1998
	Siderophore-Mediated Iron Sequestering by Shewanella putrefaciens.	Gram L.	Appl Environ Microbiol	10.1128/aem.60.6.2132-2136.1994	1994
Enzymology	Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens.	DiChristina TJ, DeLong EF.	Appl Environ Microbiol	10.1128/aem.59.12.4152-4160.1993	1993
Metabolism	Role of the tetraheme cytochrome CymA in anaerobic electron transport in cells of Shewanella putrefaciens MR-1 with normal levels of menaquinone.	Myers JM, Myers CR.	J Bacteriol	10.1128/jb.182.1.67-75.2000	2000
Metabolism	Phylogeny of dissimilatory sulfite reductases supports an early origin of sulfate respiration.	Wagner M, Roger AJ, Flax JL, Brusseau GA, Stahl DA.	J Bacteriol	10.1128/jb.180.11.2975-2982.1998	1998
Metabolism	Effect of electron donor and solution chemistry on products of dissimilatory reduction of technetium by Shewanella putrefaciens.	Wildung RE, Gorby YA, Krupka KM, Hess NJ, Li SW, Plymale AE, McKinley JP, Fredrickson JK.	Appl Environ Microbiol	10.1128/aem.66.6.2451-2460.2000	2000
Phylogeny	Identification of Shewanella baltica as the most important H2S-producing species during iced storage of Danish marine fish.	Fonnesbech Vogel B, Venkateswaran K, Satomi M, Gram L.	Appl Environ Microbiol	10.1128/aem.71.11.6689-6697.2005	2005
Metabolism	Annexin A5 binds to lipopolysaccharide and reduces its endotoxin activity.	Rand JH, Wu XX, Lin EY, Griffel A, Gialanella P, McKitrick JC.	mBio	10.1128/mbio.00292-11	2012
Phylogeny	Homogeneity of Danish environmental and clinical isolates of Shewanella algae.	Vogel BF, Holt HM, Gerner-Smidt P, Bundvad A, Sogaard P, Gram L.	Appl Environ Microbiol	10.1128/aem.66.1.443-448.2000	2000
Metabolism	Iron-reducing bacteria accumulate ferric oxyhydroxide nanoparticle aggregates that may support planktonic growth.	Luef B, Fakra SC, Csencsits R, Wrighton KC, Williams KH, Wilkins MJ, Downing KH, Long PE, Comolli LR, Banfield JF.	ISME J	10.1038/ismej.2012.103	2013
	A Novel PhosphorImager-Based Technique for Monitoring the Microbial Reduction of Technetium.	Lloyd JR, Macaskie LE.	Appl Environ Microbiol	10.1128/aem.62.2.578-582.1996	1996
Phylogeny	DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes.	Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM.	Proc Natl Acad Sci U S A	10.1073/pnas.171178898	2001
Enzymology	Development of a rapid real-time PCR method as a tool to quantify viable Photobacterium phosphoreum bacteria in salmon (Salmo salar) steaks.	Mace S, Mamlouk K, Chipchakova S, Prevost H, Joffraud JJ, Dalgaard P, Pilet MF, Dousset X.	Appl Environ Microbiol	10.1128/aem.03677-12	2013
Metabolism	Respiration-linked proton translocation coupled to anaerobic reduction of manganese(IV) and iron(III) in Shewanella putrefaciens MR-1.	Myers CR, Nealson KH.	J Bacteriol	10.1128/jb.172.11.6232-6238.1990	1990
Biotechnology	Inhibitory effect against pathogenic and spoilage bacteria of Pseudomonas strains isolated from spoiled and fresh fish.	Gram L.	Appl Environ Microbiol	10.1128/aem.59.7.2197-2203.1993	1993
Metabolism	Microbial reduction of manganese and iron: new approaches to carbon cycling.	Nealson KH, Myers CR.	Appl Environ Microbiol	10.1128/aem.58.2.439-443.1992	1992
Metabolism	Nonradioactive colony hybridization assay for detection and enumeration of enterotoxigenic Clostridium perfringens in raw beef.	Baez LA, Juneja VK.	Appl Environ Microbiol	10.1128/aem.61.2.807-810.1995	1995
Biotechnology	Comparison of a fluorogenic assay with a conventional method for rapid detection of Vibrio parahaemolyticus in seafoods.	Venkateswaran K, Kurusu T, Satake M, Shinoda S.	Appl Environ Microbiol	10.1128/aem.62.9.3516-3520.1996	1996
	A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples.	Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD.	Appl Environ Microbiol	10.1128/aem.64.7.2545-2553.1998	1998
	Seasonal incidence of autochthonous antagonistic Roseobacter spp. and Vibrionaceae strains in a turbot larva (Scophthalmus maximus) rearing system.	Hjelm M, Riaza A, Formoso F, Melchiorsen J, Gram L.	Appl Environ Microbiol	10.1128/aem.70.12.7288-7294.2004	2004
Metabolism	Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria.	Hovanec TA, DeLong EF.	Appl Environ Microbiol	10.1128/aem.62.8.2888-2896.1996	1996
Metabolism	Reduction of Fe(III), Cr(VI), U(VI), and Tc(VII) by Deinococcus radiodurans R1.	Fredrickson JK, Kostandarithes HM, Li SW, Plymale AE, Daly MJ.	Appl Environ Microbiol	10.1128/aem.66.5.2006-2011.2000	2000
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Metabolism	Dissimilatory Fe(III) and Mn(IV) reduction.	Lovley DR.	Microbiol Rev	10.1128/mr.55.2.259-287.1991	1991
Pathogenicity	Multiplex PCR-Lateral Flow Dipstick Method for Detection of Thermostable Direct Hemolysin (TDH) Producing V. parahaemolyticus.	Saetang J, Sukkapat P, Palamae S, Singh P, Senathipathi DN, Buatong J, Benjakul S.	Biosensors (Basel)	10.3390/bios13070698	2023
	A low cost fermentation medium for potential fibrinolytic enzyme production by a newly isolated marine bacterium, Shewanella sp. IND20.	Vijayaraghavan P, Prakash Vincent SG.	Biotechnol Rep (Amst)	10.1016/j.btre.2015.06.005	2015
	Preparation, Purification and Characterization of Antibacterial and ACE Inhibitory Peptides from Head Protein Hydrolysate of Kuruma Shrimp, Marsupenaeus japonicus.	Zhou J, Han Q, Koyama T, Ishizaki S.	Molecules	10.3390/molecules28020894	2023
Metabolism	Bacteria mediate methylation of iodine in marine and terrestrial environments.	Amachi S, Kamagata Y, Kanagawa T, Muramatsu Y.	Appl Environ Microbiol	10.1128/aem.67.6.2718-2722.2001	2001
	The surface properties of Shewanella putrefaciens 200 and S. oneidensis MR-1: the effect of pH and terminal electron acceptors.	Furukawa Y, Dale JR.	Geochem Trans	10.1186/1467-4866-14-3	2013
	Carbon Dots from Dried German Chamomile Flower and Its Residual Biomass: Characteristics, Bioactivities, Cytotoxicity and Its Preservative Effect on the Refrigerated Precooked Baby Clam (Paphia undulata).	Bora B, Palamae S, Zhang B, Yin T, Kim JT, Rhim JW, Benjakul S.	Foods	10.3390/foods14173130	2025
	Activity of Bambara Groundnut Seed Coat Extract Against Shewanella Species: Efficacy and Mechanisms of Action.	Palamae S, Suyapoh W, Boonrat O, Zhang B, Amin M, Buatong J, Benjakul S.	Foods	10.3390/foods13213516	2024
Metabolism	How does organic matter constrain the nature, size and availability of Fe nanoparticles for biological reduction?	Pedrot M, Le Boudec A, Davranche M, Dia A, Henin O	J Colloid Interface Sci	10.1016/j.jcis.2011.03.067	2011
Biotechnology	New method for rapid and sensitive quantification of sulphide-producing bacteria in fish from arctic and temperate waters.	Skjerdal OT, Lorentzen G, Tryland I, Berg JD	Int J Food Microbiol	10.1016/j.ijfoodmicro.2003.11.016	2004
Phylogeny	Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis.	Vogel BF, Jorgensen K, Christensen H, Olsen JE, Gram L	Appl Environ Microbiol	10.1128/aem.63.6.2189-2199.1997	1997
Metabolism	[A simple method for differentiation of hydrogen sulfide-producing bacteria by the pH-dependent EDTA-sensitivity test].	Kida N, Matsuzaki M, Matsukawa A, Suzuki S, Ushiama N, Kawahara K, Taguchi F	Nihon Saikingaku Zasshi	10.3412/jsb.49.769	1994
Biotechnology	Production and specificity of poly- and monoclonal antibodies raised against Shewanella putrefaciens.	Fonnesbech B, Frokiaer H, Gram L, Jespersen CM	J Appl Bacteriol	10.1111/j.1365-2672.1993.tb05152.x	1993
Phylogeny	Classification of the spoilage flora of fish, with special reference to Shewanella putrefaciens.	Stenstrom IM, Molin G	J Appl Bacteriol	10.1111/j.1365-2672.1990.tb05226.x	1990
Phylogeny	Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens).	Wilkinson SG, Caudwell PF	J Gen Microbiol	10.1099/00221287-118-2-329	1980
Metabolism	Study on spoilage potential and its molecular basis of Shewanella putrefaciens in response to cold conditions by Label-free quantitative proteomic analysis.	Qian YF, Cheng Y, Xie J, Yang SP	World J Microbiol Biotechnol	10.1007/s11274-022-03479-y	2022
	Antimicrobial Effect of Epigallocatechin Gallate Against Shewanella putrefaciens ATCC 8071: A Study Based on Cell Membrane and Biofilm.	Pei J, Yu H, Qiu W, Mei J, Xie J	Curr Microbiol	10.1007/s00284-022-02978-3	2022
Phylogeny	Shewanella hafniensis sp. nov. and Shewanella morhuae sp. nov., isolated from marine fish of the Baltic Sea.	Satomi M, Vogel BF, Gram L, Venkateswaran K	Int J Syst Evol Microbiol	10.1099/ijs.0.63931-0	2006
Phylogeny	Shewanella decolorationis sp. nov., a dye-decolorizing bacterium isolated from activated sludge of a waste-water treatment plant.	Xu M, Guo J, Cen Y, Zhong X, Cao W, Sun G	Int J Syst Evol Microbiol	10.1099/ijs.0.63157-0	2005
Phylogeny	Shewanella oncorhynchi sp. nov., a novel member of the genus Shewanella, isolated from Rainbow Trout (Oncorhynchus mykiss).	Altun S, Duman M, Ay H, Saticioglu IB	Int J Syst Evol Microbiol	10.1099/ijsem.0.005460	2022
Phylogeny	Shewanella azerbaijanica sp. nov. a novel aquatic species with high bioremediation abilities.	Nouioui I, Tarhriz V, Kim HM, Montazersaheb S, Hejazi MA, Jeon CO, Klenk HP, Hejazi MS	Arch Microbiol	10.1007/s00203-022-03112-4	2022

References

#2428	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6067
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37718	; Curators of the CIP;
#45954	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13452 D
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122075	Collection of Institut Pasteur ; Curators of the CIP; CIP 80.40
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Shewanella putrefaciens (DSM 6067, ATCC 8071, ICPB 352)

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