Name: Shewanella putrefaciens JCM 20940
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163016

Type strain:

Species: Shewanella putrefaciens

Culture col. no.: JCM 20940, IAM 13595, LMG 2263, NCTC 10737

Strain history: IAM 13595 <-- AJ 1592 <-- K. Komagata I-5.

NCBI tax ID(s): 24 (species)

SI-ID 265512

LMG 2263, IAM 13595, NCTC 10737, NCCB 97135, LMD 97.135, JCM 20940

Other strains from Shewanella putrefaciens

Section

Shewanella putrefaciens JCM 20940 is a mesophilic, Gram-negative bacterium that was isolated from Cuttlefish.

Gram-negative
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Shewanellaceae*
	Genus	*Shewanella*
	Species	**Shewanella putrefaciens**
	Full Scientific Name (LPSN)	Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonym

Alteromonas putrefaciens

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #69480]	Motility	yes Confidence in %97.902

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.842
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Cuttlefish
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Shewanella baltica NCTC10737	GCA_900636855	complete	GenBank	62322 tax ID	*
[Ref.: #66792]	Shewanella putrefaciens strain NCTC10737	24.17	complete	PATRIC	24 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shewanella putrefaciens strain NCTC10737 PATRIC: 24.17
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shewanella baltica NCTC10737 NCBI: GCA_900636855.1
[Ref.: #69480]	flagellated	yes	91.018	no
[Ref.: #69480]	gram-positive	no	98.96	no
[Ref.: #69480]	anaerobic	no	96.31	no
[Ref.: #69480]	aerobic	yes	64.534	no
[Ref.: #69480]	halophile	no	63.719	no
[Ref.: #69480]	spore-forming	no	95.669	no
[Ref.: #69480]	thermophile	no	99.754	yes
[Ref.: #69480]	glucose-util	yes	92.82	no
[Ref.: #69480]	motile	yes	92.451	no
[Ref.: #69480]	glucose-ferment	no	63.331	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 20940, IAM 13595, LMG 2263, NCTC 10737

[Ref.: #113784]

SI-ID 265512

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#113784

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265512.1 )

* These data were automatically processed and therefore are not curated

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Shewanella putrefaciens strain NCTC10737

Shewanella baltica NCTC10737

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