Shewanella putrefaciens (NCTC 10737, LMG 2263, IAM 13595)

Name: Shewanella putrefaciens (NCTC 10737, LMG 2263, IAM 13595)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163016

Type strain

Culture col. no. NCTC 10737 LMG 2263 IAM 13595 JCM 20940

NCBI tax ID(s) 24

Special Collections JCM

History IAM 13595 <-- AJ 1592 <-- K. Komagata I-5.

Links

Shewanella putrefaciens JCM 20940 is a bacterium that was isolated from Cuttlefish.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 265512

LMG 2263,IAM 13595,NCTC 10737,NCCB 97135,LMD 97.135,JCM 20940

@ref 20215

Last LPSN update 2026-02-09 11:39:31

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella putrefaciens

Full scientific name Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonyms (1)

Alteromonas putrefaciens

BacDive ID	Other strains from **Shewanella putrefaciens** (60)	Type strain
14054	S. putrefaciens 95, DSM 6067, ATCC 8071, ICPB 352, NCIB 10471, ... (type strain)
14053	S. putrefaciens DSM 1818, ATCC 12099, IAM 1510, NCIB 8786, ...
14055	S. putrefaciens DSM 9451, LMG 2266 t1, NCTC CL256/73
14057	S. putrefaciens DSM 9461, ATCC 8073, IFO 3910, LMG 2369, ...
14058	S. putrefaciens DSM 15988, NCIMB 12202
14059	S. putrefaciens 180, 3353, DSM 50426, ATCC 8072, NCIB 10472
100617	S. putrefaciens STI05050(IMET), W1,
134814	S. putrefaciens CIP 69.30
134830	S. putrefaciens II 1 Ax, CIP 72.4
138495	S. putrefaciens CIP 59.12, NCDO 756, NCIMB 8615
138895	S. putrefaciens CIP 63.53, CCEB 519, JCM 20573, ATCC 19857, ...
141189	S. putrefaciens CCUG 57
141209	S. putrefaciens CCUG 194
141380	S. putrefaciens CCUG 1321
141385	S. putrefaciens CCUG 1327
141642	S. putrefaciens CCUG 4270
141722	S. putrefaciens CCUG 5188
142551	S. putrefaciens CCUG 12946
142552	S. putrefaciens CCUG 12947
142553	S. putrefaciens CCUG 12948
142835	S. putrefaciens CCUG 15258
142927	S. putrefaciens CCUG 15766
142931	S. putrefaciens CCUG 15789
142968	S. putrefaciens CCUG 15951
143370	S. putrefaciens CCUG 18762
143436	S. putrefaciens CCUG 19119
144092	S. putrefaciens CCUG 22946
144093	S. putrefaciens CCUG 22948
146923	S. putrefaciens CCUG 32456 B
147235	S. putrefaciens CCUG 33122
148152	S. putrefaciens CCUG 34907
148929	S. putrefaciens CCUG 36599
148930	S. putrefaciens CCUG 36600
148932	S. putrefaciens CCUG 36602
148966	S. putrefaciens CCUG 36653
148967	S. putrefaciens CCUG 36654
157516	S. putrefaciens IMI 349021
162912	S. putrefaciens JCM 20396, IAM 12089, NRRL B-1002
163017	S. putrefaciens JCM 20941, IAM 13596
163018	S. putrefaciens JCM 20942, CDC A4186, IAM 13597
163019	S. putrefaciens JCM 20943, CDC A4186, IAM 13598
163020	S. putrefaciens JCM 20944, CDC A7191, IAM 13599
163021	S. putrefaciens JCM 20945, CDC A7310, IAM 13600
163022	S. putrefaciens JCM 20946, CDC A7921, IAM 13601
163023	S. putrefaciens JCM 20947, CDC A7921, IAM 13602
163024	S. putrefaciens JCM 20948, CDC B23, IAM 13603
163025	S. putrefaciens JCM 20949, IAM 13604
163026	S. putrefaciens JCM 20950, IAM 13605
163027	S. putrefaciens JCM 20951, IAM 13606
163028	S. putrefaciens JCM 20952, IAM 13607
163029	S. putrefaciens JCM 20953, IAM 13608
163030	S. putrefaciens JCM 20954, IAM 13609
163031	S. putrefaciens JCM 20955, IAM 13610
163032	S. putrefaciens JCM 20956, IAM 13611
163033	S. putrefaciens JCM 20957, IAM 13612
163034	S. putrefaciens JCM 20958, IAM 13613
163035	S. putrefaciens JCM 20960, IAM 13615, NCTC 10762
163036	S. putrefaciens JCM 20961, IAM 13616, LMG 2267, NCTC 10763
163037	S. putrefaciens JCM 20963, IAM 13618
163038	S. putrefaciens JCM 20964, IAM 13619

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.6
125438	negative	99

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	97.8

Spore formation

@ref	Spore formation	Confidence
125439		98.5

Isolation, sampling and environmental information

Isolation

67770

Sample typeCuttlefish

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	44858_H01 assembly for Shewanella baltica NCTC10737	complete	GCA_900636855	24.17	62322	98.24

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella baltica NCTC10737
NCBI: GCA_900636855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.50	no
125439	motility	BacteriaNetⓘ	yes	84.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella baltica NCTC10737
NCBI: GCA_900636855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.88	no
125438	aerobic	aerobicⓘ	yes	50.50	no
125438	spore-forming	spore-formingⓘ	no	87.55	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	89.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains.	Wu K, Cheng ZH, Williams E, Turner NT, Ran D, Li H, Zhou X, Guo H, Sung W, Liu DF, Lynch M, Long H.	Genome Biol Evol	10.1093/gbe/evab148	2021

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Shewanella putrefaciens (NCTC 10737, LMG 2263, IAM 13595)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900636855

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media