Shewanella putrefaciens (DSM 1818, ATCC 12099, IAM 1510)

Name: Shewanella putrefaciens (DSM 1818, ATCC 12099, IAM 1510)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14053

Type strain

Culture col. no. DSM 1818 ATCC 12099 IAM 1510 NCIB 8786 NCTC 10695 3 more

NCBI tax ID(s) 24

Special Collections DSMZ JCM CIP

History <- IAM <- ATCC <- H. Pivnick (Pseudomonas rubescens) IAM 1510 <-- ATCC 12099 <-- H. Pivnick. CIP <- 1959, NCIB, "Pseudomonas rubescens" <- 1956, ATCC <- H. Pivnick

Links

Shewanella putrefaciens DSM 1818 is an obligate aerobe, Gram-negative, motile human pathogen that was isolated from Cutling oil.

Gram-negative motile rod-shaped obligate aerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 92713

LMG 2279,ATCC 12099,ATCC 19857,DSM 1818,IAM 1510,IMET 10410,NCIB 8768,NCTC 10695,NRRL B-1651,CCUG 713,CIP 5928,CCUG 722,NCIB 8786,NCIMB 8768,CIP 59.28,CIP 63.53,BCRC 11073,CCRC 11073,NCIMB 8786,IAM 12425,JCM 20573,JCM 20191

@ref 20215

Last LPSN update 2026-02-09 11:21:18

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella putrefaciens

Full scientific name Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

Synonyms (1)

Alteromonas putrefaciens

BacDive ID	Other strains from **Shewanella putrefaciens** (60)	Type strain
14054	S. putrefaciens 95, DSM 6067, ATCC 8071, ICPB 352, NCIB 10471, ... (type strain)
14055	S. putrefaciens DSM 9451, LMG 2266 t1, NCTC CL256/73
14057	S. putrefaciens DSM 9461, ATCC 8073, IFO 3910, LMG 2369, ...
14058	S. putrefaciens DSM 15988, NCIMB 12202
14059	S. putrefaciens 180, 3353, DSM 50426, ATCC 8072, NCIB 10472
100617	S. putrefaciens STI05050(IMET), W1,
134814	S. putrefaciens CIP 69.30
134830	S. putrefaciens II 1 Ax, CIP 72.4
138495	S. putrefaciens CIP 59.12, NCDO 756, NCIMB 8615
138895	S. putrefaciens CIP 63.53, CCEB 519, JCM 20573, ATCC 19857, ...
141189	S. putrefaciens CCUG 57
141209	S. putrefaciens CCUG 194
141380	S. putrefaciens CCUG 1321
141385	S. putrefaciens CCUG 1327
141642	S. putrefaciens CCUG 4270
141722	S. putrefaciens CCUG 5188
142551	S. putrefaciens CCUG 12946
142552	S. putrefaciens CCUG 12947
142553	S. putrefaciens CCUG 12948
142835	S. putrefaciens CCUG 15258
142927	S. putrefaciens CCUG 15766
142931	S. putrefaciens CCUG 15789
142968	S. putrefaciens CCUG 15951
143370	S. putrefaciens CCUG 18762
143436	S. putrefaciens CCUG 19119
144092	S. putrefaciens CCUG 22946
144093	S. putrefaciens CCUG 22948
146923	S. putrefaciens CCUG 32456 B
147235	S. putrefaciens CCUG 33122
148152	S. putrefaciens CCUG 34907
148929	S. putrefaciens CCUG 36599
148930	S. putrefaciens CCUG 36600
148932	S. putrefaciens CCUG 36602
148966	S. putrefaciens CCUG 36653
148967	S. putrefaciens CCUG 36654
157516	S. putrefaciens IMI 349021
162912	S. putrefaciens JCM 20396, IAM 12089, NRRL B-1002
163016	S. putrefaciens JCM 20940, IAM 13595, LMG 2263, NCTC 10737
163017	S. putrefaciens JCM 20941, IAM 13596
163018	S. putrefaciens JCM 20942, CDC A4186, IAM 13597
163019	S. putrefaciens JCM 20943, CDC A4186, IAM 13598
163020	S. putrefaciens JCM 20944, CDC A7191, IAM 13599
163021	S. putrefaciens JCM 20945, CDC A7310, IAM 13600
163022	S. putrefaciens JCM 20946, CDC A7921, IAM 13601
163023	S. putrefaciens JCM 20947, CDC A7921, IAM 13602
163024	S. putrefaciens JCM 20948, CDC B23, IAM 13603
163025	S. putrefaciens JCM 20949, IAM 13604
163026	S. putrefaciens JCM 20950, IAM 13605
163027	S. putrefaciens JCM 20951, IAM 13606
163028	S. putrefaciens JCM 20952, IAM 13607
163029	S. putrefaciens JCM 20953, IAM 13608
163030	S. putrefaciens JCM 20954, IAM 13609
163031	S. putrefaciens JCM 20955, IAM 13610
163032	S. putrefaciens JCM 20956, IAM 13611
163033	S. putrefaciens JCM 20957, IAM 13612
163034	S. putrefaciens JCM 20958, IAM 13613
163035	S. putrefaciens JCM 20960, IAM 13615, NCTC 10762
163036	S. putrefaciens JCM 20961, IAM 13616, LMG 2267, NCTC 10763
163037	S. putrefaciens JCM 20963, IAM 13618
163038	S. putrefaciens JCM 20964, IAM 13619

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122074	negative	rod-shaped
125439	negative		99.6
125438			90.069
125438	negative		99

Pigmentation

@ref	Production	Name
122074		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
665	OXOID NUTRIENT BROTH (DSMZ Medium 948)	Medium recipe at MediaDive	Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
665	ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)	Medium recipe at MediaDive	Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
38381	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122074	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
665	positive	growth	28
665	positive	growth	30
38381	positive	growth	25
67770	positive	growth	25
122074	positive	growth	5-37
122074	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
122074	obligate aerobe
125439	obligate aerobe	95

Spore formation

@ref	Spore formation	Confidence
125439		98.8
125438		92.399

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122074	NaCl	positive	growth	0-6 %
122074	NaCl		growth	8 %
122074	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
122074	16947 ChEBI	citrate	-	carbon source
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
122074	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
122074	17632 ChEBI	nitrate	+	reduction
122074	17632 ChEBI	nitrate	-	respiration
122074	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
122074	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122074	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122074	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122074	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
122074	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122074	caseinase	-	3.4.21.50
122074	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122074	DNase	+
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122074	gelatinase	+/-
122074	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122074	lipase	-
68382	lipase (C 14)	-		from API zym
122074	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122074	ornithine decarboxylase	+	4.1.1.17
122074	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
122074	tryptophan deaminase	-
122074	tween esterase	-
122074	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122074	-	+	+	+	-	+	-	-	-	+	+	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122074	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122074	not determinedn.d.	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	+	+	+	+	+	+	+	-	-	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Isolation date
67770	Cutling oil
122074	Oil emulsion from a machine shop	1955

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
665			2	Risk group (German classification) According to TRBA 466
122074			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	57675_D02 assembly for Shewanella putrefaciens NCTC10695	contig	GCA_900457065	24.14	2823267113	24	78.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Shewanella putrefaciens 16S ribosomal RNA (rrs) gene, partial sequence	U91553	1354		24

GC content

@ref	GC-content (mol%)
665	46.9
665	43.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Shewanella putrefaciens NCTC10695
NCBI: GCA_900457065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	yes	79.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella putrefaciens strain NCTC10695
PATRIC: 24.14

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	92.47	no
125438	spore-forming	spore-formingⓘ	no	92.40	no
125438	aerobic	aerobicⓘ	yes	58.62	yes
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	90.07	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genotyping of heterotrophic bacteria from the central baltic sea by use of low-molecular-weight RNA profiles.	Hofle MG, Brettar I.	Appl Environ Microbiol	10.1128/aem.62.4.1383-1390.1996	1996
Enzymology	Design and application of rRNA-targeted oligonucleotide probes for the dissimilatory iron- and manganese-reducing bacterium Shewanella putrefaciens.	DiChristina TJ, DeLong EF.	Appl Environ Microbiol	10.1128/aem.59.12.4152-4160.1993	1993
Phylogeny	Differentiation of Shewanella putrefaciens and Shewanella alga on the basis of whole-cell protein profiles, ribotyping, phenotypic characterization, and 16S rRNA gene sequence analysis.	Vogel BF, Jorgensen K, Christensen H, Olsen JE, Gram L.	Appl Environ Microbiol	10.1128/aem.63.6.2189-2199.1997	1997
Metabolism	A novel Bacillus pumilus-related strain from tropical landfarm soil is capable of rapid dibenzothiophene degradation and biodesulfurization.	Buzanello EB, Rezende RP, Sousa FM, Marques Ede L, Loguercio LL.	BMC Microbiol	10.1186/s12866-014-0257-8	2014
Metabolism	Electron transfer and biofilm formation of Shewanella putrefaciens as function of anode potential.	Carmona-Martinez AA, Harnisch F, Kuhlicke U, Neu TR, Schroder U	Bioelectrochemistry	10.1016/j.bioelechem.2012.05.002	2012

References

#665	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1818
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38381	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#122074	Collection of Institut Pasteur ; Curators of the CIP; CIP 59.28
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Shewanella putrefaciens (DSM 1818, ATCC 12099, IAM 1510)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900457065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media