Strain identifier

BacDive ID: 14053

Type strain: No

Species: Shewanella putrefaciens

Strain history: CIP <- 1959, NCIB, "Pseudomonas rubescens" <- 1956, ATCC <- H. Pivnick

NCBI tax ID(s): 24 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 665

BacDive-ID: 14053

DSM-Number: 1818

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile, human pathogen

description: Shewanella putrefaciens DSM 1818 is an obligate aerobe, mesophilic, motile human pathogen that was isolated from Cutling oil.

NCBI tax id

  • NCBI tax id: 24
  • Matching level: species

strain history

@refhistory
665<- IAM <- ATCC <- H. Pivnick (Pseudomonas rubescens)
67770IAM 1510 <-- ATCC 12099 <-- H. Pivnick.
122074CIP <- 1959, NCIB, "Pseudomonas rubescens" <- 1956, ATCC <- H. Pivnick

doi: 10.13145/bacdive14053.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella putrefaciens
  • full scientific name: Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986

  • synonyms

    • @ref: 20215
    • synonym: Alteromonas putrefaciens

@ref: 665

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella putrefaciens

full scientific name: Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.745
6948099.992negative
122074yesnegativerod-shaped

pigmentation

  • @ref: 122074
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
665OXOID NUTRIENT BROTH (DSMZ Medium 948)yeshttps://mediadive.dsmz.de/medium/948Name: OXOID NUTRIENT BROTH (DSMZ Medium 948) Composition: Nutrient broth 13.0 g/l Distilled water
665ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)yeshttps://mediadive.dsmz.de/medium/7Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
38381MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122074CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
665positivegrowth28mesophilic
665positivegrowth30mesophilic
38381positivegrowth25mesophilic
67770positivegrowth25mesophilic
122074positivegrowth5-37
122074nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122074
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.994

halophily

@refsaltgrowthtested relationconcentration
122074NaClpositivegrowth0-6 %
122074NaClnogrowth8 %
122074NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose-builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122074citrate-carbon source16947
122074esculin+hydrolysis4853
122074nitrate+reduction17632
122074nitrite-reduction16301
122074nitrate-respiration17632

antibiotic resistance

  • @ref: 122074
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122074
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
122074oxidase+
122074beta-galactosidase-3.2.1.23
122074alcohol dehydrogenase-1.1.1.1
122074gelatinase+/-
122074amylase-
122074DNase+
122074caseinase-3.4.21.50
122074catalase+1.11.1.6
122074tween esterase-
122074lecithinase-
122074lipase-
122074lysine decarboxylase-4.1.1.18
122074ornithine decarboxylase+4.1.1.17
122074tryptophan deaminase-
122074urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122074-+++-+---+++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122074-------------------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122074+++-+--------------+++--+------+++---------++----+++++++++--+---+-----++++++++++++++---+++++++--+-+

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
67770Cutling oil
122074Oil emulsion from a machine shop1955

Safety information

risk assessment

@refpathogenicity humanpathogenicity animalbiosafety levelbiosafety level comment
665yesyes2Risk group (German classification)
1220741Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Shewanella putrefaciens 16S ribosomal RNA (rrs) gene, partial sequence
  • accession: U91553
  • length: 1354
  • database: ena
  • NCBI tax ID: 24

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Shewanella putrefaciens NCTC10695GCA_900457065contigncbi24
66792Shewanella putrefaciens strain NCTC1069524.14wgspatric24
66792Shewanella putrefaciens NCTC 106952823267113draftimg24

GC content

@refGC-content
66546.9
66543.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.219no
gram-positiveno98.779no
anaerobicno95.441no
aerobicyes62.608no
halophileno70.542no
spore-formingno95.959no
glucose-utilyes88.738no
flagellatedyes88.545no
thermophileno99.61yes
glucose-fermentno67.665no

External links

@ref: 665

culture collection no.: DSM 1818, ATCC 12099, IAM 1510, NCIB 8786, NCTC 10695, JCM 20191, NCIMB 8768, CIP 59.28

straininfo link

  • @ref: 83222
  • straininfo: 92713

literature

  • topic: Metabolism
  • Pubmed-ID: 22658509
  • title: Electron transfer and biofilm formation of Shewanella putrefaciens as function of anode potential.
  • authors: Carmona-Martinez AA, Harnisch F, Kuhlicke U, Neu TR, Schroder U
  • journal: Bioelectrochemistry
  • DOI: 10.1016/j.bioelechem.2012.05.002
  • year: 2012
  • mesh: Biofilms/*growth & development, Electric Conductivity, Electrochemistry, Electrodes, Electron Transport, Shewanella putrefaciens/chemistry/metabolism/*physiology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
665Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1818)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1818
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38381Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9769
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83222Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92713.1StrainInfo: A central database for resolving microbial strain identifiers
122074Curators of the CIPCollection of Institut Pasteur (CIP 59.28)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2059.28