Strain identifier
BacDive ID: 14059
Type strain: 
Species: Shewanella putrefaciens
Strain Designation: 180, 3353
Strain history: <- ICBP, 3353 <- ATCC <- B.W. Hammer, 180 (Pseudomonas putrefaciens)
NCBI tax ID(s): 24 (species)
version 8.1 (current version)
General
@ref: 12719
BacDive-ID: 14059
DSM-Number: 50426
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Shewanella putrefaciens 180 is a mesophilic human pathogen that was isolated from butter.
NCBI tax id
- NCBI tax id: 24
- Matching level: species
strain history
- @ref: 12719
- history: <- ICBP, 3353 <- ATCC <- B.W. Hammer, 180 (Pseudomonas putrefaciens)
doi: 10.13145/bacdive14059.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella putrefaciens
- full scientific name: Shewanella putrefaciens (Lee et al. 1981 ex Derby and Hammer 1931) MacDonell and Colwell 1986
synonyms
- @ref: 20215
- synonym: Alteromonas putrefaciens
@ref: 12719
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella putrefaciens
full scientific name: Shewanella putrefaciens (Lee et al. 1981) MacDonell and Colwell 1986
strain designation: 180, 3353
type strain: no
Culture and growth conditions
culture medium
- @ref: 12719
- name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7)
- growth: yes
- link: https://mediadive.dsmz.de/medium/7
- composition: Name: ANCYLOBACTER - SPIROSOMA MEDIUM (DSMZ Medium 7) Composition: Agar 15.0 g/l Yeast extract 1.0 g/l Peptone 1.0 g/l Glucose 1.0 g/l Distilled water
culture temp
- @ref: 12719
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 12719
- sample type: butter
isolation source categories
- Cat1: #Engineered
- Cat2: #Food production
- Cat3: #Dairy product
Safety information
risk assessment
- @ref: 12719
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Shewanella putrefaciens 16S ribosomal RNA gene, partial sequence
- accession: U91593
- length: 1171
- database: ena
- NCBI tax ID: 24
Genome sequences
- @ref: 66792
- description: Shewanella putrefaciens DSM 50426
- accession: GCA_025397935
- assembly level: contig
- database: ncbi
- NCBI tax ID: 24
GC content
- @ref: 12719
- GC-content: 47.2
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 94.075 | no |
| flagellated | yes | 91.044 | no |
| gram-positive | no | 98.848 | no |
| anaerobic | no | 94.88 | no |
| aerobic | yes | 54.392 | no |
| halophile | no | 70.38 | no |
| spore-forming | no | 95.658 | no |
| glucose-ferment | no | 65.565 | no |
| thermophile | no | 99.595 | yes |
| glucose-util | yes | 89.617 | no |
External links
@ref: 12719
culture collection no.: DSM 50426, ATCC 8072, NCIB 10472
straininfo link
- @ref: 83228
- straininfo: 34914
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh |
|---|---|---|---|---|---|---|---|
| Phylogeny | 7441198 | Lipid composition and chemotaxonomy of Pseudomonas putrefaciens (Alteromonas putrefaciens). | Wilkinson SG, Caudwell PF | J Gen Microbiol | 10.1099/00221287-118-2-329 | 1980 | Fatty Acids/analysis, Lipids/*analysis, Lipopolysaccharides/analysis, Phosphatidylethanolamines/analysis, Phosphatidylglycerols/analysis, Phospholipids/analysis, Pseudomonas/analysis/*classification |
| 36238595 | Genome collection of Shewanella spp. isolated from spoiled lamb. | Palevich N, Palevich FP, Gardner A, Brightwell G, Mills J | Front Microbiol | 10.3389/fmicb.2022.976152 | 2022 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12719 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 50426) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-50426 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 83228 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID34914.1 | StrainInfo: A central database for resolving microbial strain identifiers |