Acinetobacter baumannii CIP 110428 is a Gram-negative, oval-shaped bacterium of the family Moraxellaceae.
Gram-negative oval-shaped genome sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter baumannii |
| Full scientific name Acinetobacter baumannii Bouvet and Grimont 1986 |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 33359 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 33359 | CIP Medium 29 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | |
|---|---|---|---|---|
| 33359 | positive | growth | 30 |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 33359 | 1 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Acin_baum_NIPH_146_V1 assembly for Acinetobacter baumannii NIPH 146 | scaffold | 1217639 | 74.34 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 87.90 | no |
| 125439 | motility | BacteriaNetⓘ | no | 54.30 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 94.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.41 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.31 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.90 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.48 | no |
| 125438 | flagellated | motile2+ⓘ | no | 77.18 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| K2 Capsule Depolymerase Is Highly Stable, Is Refractory to Resistance, and Protects Larvae and Mice from Acinetobacter baumannii Sepsis. | Oliveira H, Mendes A, Fraga AG, Ferreira A, Pimenta AI, Mil-Homens D, Fialho AM, Pedrosa J, Azeredo J. | Appl Environ Microbiol | 10.1128/aem.00934-19 | 2019 | ||
| Metabolism | Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter baumannii Capsule K45. | Oliveira H, Costa AR, Ferreira A, Konstantinides N, Santos SB, Boon M, Noben JP, Lavigne R, Azeredo J. | J Virol | 10.1128/jvi.01163-18 | 2019 | |
| Loss of a Branch Sugar in the Acinetobacter baumannii K3-Type Capsular Polysaccharide Due To Frameshifts in the gtr6 Glycosyltransferase Gene Leads To Susceptibility To Phage APK37.1. | Timoshina OY, Kasimova AA, Shneider MM, Arbatsky NP, Shashkov AS, Shelenkov AA, Mikhailova YV, Popova AV, Hall RM, Knirel YA, Kenyon JJ. | Microbiol Spectr | 10.1128/spectrum.03631-22 | 2023 | ||
| Pathogenicity | Dissecting Colistin Resistance Mechanisms in Extensively Drug-Resistant Acinetobacter baumannii Clinical Isolates. | Trebosc V, Gartenmann S, Totzl M, Lucchini V, Schellhorn B, Pieren M, Lociuro S, Gitzinger M, Tigges M, Bumann D, Kemmer C. | mBio | 10.1128/mbio.01083-19 | 2019 | |
| Genomic analysis of Acinetobacter baumannii prophages reveals remarkable diversity and suggests profound impact on bacterial virulence and fitness. | Costa AR, Monteiro R, Azeredo J. | Sci Rep | 10.1038/s41598-018-33800-5 | 2018 | ||
| Database for the ampC alleles in Acinetobacter baumannii. | Karah N, Jolley KA, Hall RM, Uhlin BE. | PLoS One | 10.1371/journal.pone.0176695 | 2017 | ||
| Pathogenicity | Deciphering Multifactorial Resistance Phenotypes in Acinetobacter baumannii by Genomics and Targeted Label-free Proteomics. | Cecchini T, Yoon EJ, Charretier Y, Bardet C, Beaulieu C, Lacoux X, Docquier JD, Lemoine J, Courvalin P, Grillot-Courvalin C, Charrier JP. | Mol Cell Proteomics | 10.1074/mcp.ra117.000107 | 2018 | |
| Metabolism | Contact-dependent growth inhibition systems in Acinetobacter. | De Gregorio E, Zarrilli R, Di Nocera PP. | Sci Rep | 10.1038/s41598-018-36427-8 | 2019 | |
| Phylogeny | Identification of 50 class D beta-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp. | Perichon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.01261-13 | 2014 | |
| Genetics | The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. | Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP. | Genome Biol Evol | 10.1093/gbe/evu225 | 2014 | |
| Genetics | A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii. | Chan AP, Sutton G, DePew J, Krishnakumar R, Choi Y, Huang XZ, Beck E, Harkins DM, Kim M, Lesho EP, Nikolich MP, Fouts DE. | Genome Biol | 10.1186/s13059-015-0701-6 | 2015 | |
| Metabolism | Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. | Shashkov AS, Cahill SM, Arbatsky NP, Westacott AC, Kasimova AA, Shneider MM, Popova AV, Shagin DA, Shelenkov AA, Mikhailova YV, Yanushevich YG, Edelstein MV, Kenyon JJ, Knirel YA | Carbohydr Res | 10.1016/j.carres.2019.107774 | 2019 | |
| Genetics | Structure of the neutral capsular polysaccharide of Acinetobacter baumannii NIPH146 that carries the KL37 capsule gene cluster. | Arbatsky NP, Shneider MM, Kenyon JJ, Shashkov AS, Popova AV, Miroshnikov KA, Volozhantsev NV, Knirel YA | Carbohydr Res | 10.1016/j.carres.2015.05.003 | 2015 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #33359 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110428 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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