Acinetobacter baumannii DSM 30011 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Moraxellaceae.
Gram-negative rod-shaped obligate aerobe mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter baumannii |
| Full scientific name Acinetobacter baumannii Bouvet and Grimont 1986 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9087 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9087 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 40928 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 116741 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 116741 | 16947 ChEBI | citrate | + | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | + | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | + | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 116741 | 17234 ChEBI | glucose | +/- | degradation | |
| 68369 | 30849 ChEBI | L-arabinose | + | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 116741 | 17632 ChEBI | nitrate | - | reduction | |
| 116741 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 116741 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 116741 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 116741 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | - | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 9087 | catalase | + | 1.11.1.6 | |
| 116741 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 9087 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 116741 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 116741 | gelatinase | - | ||
| 68369 | gelatinase | - | from API 20NE | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 116741 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 116741 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | + | from API zym |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.40 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 56.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 92.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 99.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.36 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 89.77 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.90 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.98 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 76.68 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Microbiome-derived antimicrobial peptides show therapeutic activity against the critically important priority pathogen, Acinetobacter baumannii. | Alexander PJ, Oyama LB, Olleik H, Godoy Santos F, O'Brien S, Cookson A, Cochrane SA, Gilmore BF, Maresca M, Huws SA. | NPJ Biofilms Microbiomes | 10.1038/s41522-024-00560-2 | 2024 | ||
| Incidence of an Intracellular Multiplication Niche among Acinetobacter baumannii Clinical Isolates. | Rubio T, Gagne S, Debruyne C, Dias C, Cluzel C, Mongellaz D, Rousselle P, Gottig S, Seifert H, Higgins PG, Salcedo SP. | mSystems | 10.1128/msystems.00488-21 | 2022 | ||
| Phylogeny | Genomic and phenotypic analyses of diverse non-clinical Acinetobacter baumannii strains reveals strain-specific virulence and resistance capacity. | Hamidian M, Maharjan RP, Farrugia DN, Delgado NN, Dinh H, Short FL, Kostoulias X, Peleg AY, Paulsen IT, Cain AK. | Microb Genom | 10.1099/mgen.0.000765 | 2022 | |
| DNA uptake by the nosocomial pathogen Acinetobacter baumannii occurs during movement along wet surfaces. | Wilharm G, Piesker J, Laue M, Skiebe E. | J Bacteriol | 10.1128/jb.00754-13 | 2013 | ||
| The type VI secretion system of the emerging pathogen Stenotrophomonas maltophilia complex has antibacterial properties. | Crisan CV, Van Tyne D, Goldberg JB. | mSphere | 10.1128/msphere.00584-23 | 2023 | ||
| Pathogenicity | Bioinformatic Analysis of the Type VI Secretion System and Its Potential Toxins in the Acinetobacter Genus. | Repizo GD, Espariz M, Seravalle JL, Salcedo SP. | Front Microbiol | 10.3389/fmicb.2019.02519 | 2019 | |
| Phylogeny | Characterization of Acinetobacter type strains and isolates obtained from wastewater treatment plants by PCR fingerprinting. | Wiedmann-al-Ahmad M, Tichy HV, Schon G. | Appl Environ Microbiol | 10.1128/aem.60.11.4066-4071.1994 | 1994 | |
| Pathogenicity | A new and promiscuous alpha/beta hydrolase from Acinetobacter tandoii DSM 14970 T inactivates the mycotoxin ochratoxin A. | Sanchez-Arroyo A, Plaza-Vinuesa L, Abeijon-Mukdsi MC, de Las Rivas B, Mancheno JM, Munoz R. | Appl Microbiol Biotechnol | 10.1007/s00253-024-13073-x | 2024 | |
| Acinetobacter baumannii in human body louse. | La Scola B, Raoult D. | Emerg Infect Dis | 10.3201/eid1009.040242 | 2004 | ||
| Pathogenicity | Identification of a Contact-Dependent Growth Inhibition (CDI) System That Reduces Biofilm Formation and Host Cell Adhesion of Acinetobacter baumannii DSM30011 Strain. | Roussin M, Rabarioelina S, Cluzeau L, Cayron J, Lesterlin C, Salcedo SP, Bigot S | Front Microbiol | 10.3389/fmicb.2019.02450 | 2019 | |
| Genetics | The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. | Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP | Genome Biol Evol | 10.1093/gbe/evx162 | 2017 | |
| Pathogenicity | Differential Role of the T6SS in Acinetobacter baumannii Virulence. | Repizo GD, Gagne S, Foucault-Grunenwald ML, Borges V, Charpentier X, Limansky AS, Gomes JP, Viale AM, Salcedo SP | PLoS One | 10.1371/journal.pone.0138265 | 2015 |
| #9087 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30011 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40928 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #116741 | Collection of Institut Pasteur ; Curators of the CIP; CIP 68.38 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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