Strain identifier
BacDive ID: 134717
Type strain: 
Species: Acinetobacter baumannii
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146
NCBI tax ID(s): 1217639 (strain), 470 (species)
version 9.1 (current version)
General
@ref: 33359
BacDive-ID: 134717
keywords: genome sequence, Bacteria, Gram-negative
description: Acinetobacter baumannii CIP 110428 is a Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1217639 | strain |
| 470 | species |
strain history
| @ref | history |
|---|---|
| 33359 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146 |
| 33359 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146 |
doi: 10.13145/bacdive134717.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter baumannii
- full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986
@ref: 33359
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter baumannii
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 98.5 | ||
| 33359 | negative | oval-shaped | no |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 33359 | MEDIUM 29- Brain heart agar | yes | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |
| 33359 | CIP Medium 29 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29 |
culture temp
- @ref: 33359
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: aerobe
- confidence: 90.307
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 92.898 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 33359 | Praha | Czech Republic | CZE | Europe | ||
| 33359 | Prague | Czech Republic | CZE | Europe | Human, Wound | 1993 |
Safety information
risk assessment
- @ref: 33359
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter baumannii NIPH 146 | GCA_000368185 | scaffold | ncbi | 1217639 |
| 66792 | Acinetobacter baumannii NIPH 146 | 1217639.3 | wgs | patric | 1217639 |
| 66792 | Acinetobacter baumannii NIPH 146 | 2534681908 | draft | img | 1217639 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.41 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 90.307 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 92.898 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 99.475 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 77.179 | no |
External links
@ref: 33359
culture collection no.: CIP 110428, NIPH 146
straininfo link
- @ref: 92184
- straininfo: 412935
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 26057991 | Structure of the neutral capsular polysaccharide of Acinetobacter baumannii NIPH146 that carries the KL37 capsule gene cluster. | Arbatsky NP, Shneider MM, Kenyon JJ, Shashkov AS, Popova AV, Miroshnikov KA, Volozhantsev NV, Knirel YA | Carbohydr Res | 10.1016/j.carres.2015.05.003 | 2015 | Acinetobacter baumannii/*chemistry/*genetics, Bacterial Capsules/*chemistry/*genetics, Carbohydrate Sequence, Genetic Loci/genetics, Molecular Sequence Data, Polysaccharides, Bacterial/*chemistry | |
| Metabolism | 31421354 | Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures. | Shashkov AS, Cahill SM, Arbatsky NP, Westacott AC, Kasimova AA, Shneider MM, Popova AV, Shagin DA, Shelenkov AA, Mikhailova YV, Yanushevich YG, Edelstein MV, Kenyon JJ, Knirel YA | Carbohydr Res | 10.1016/j.carres.2019.107774 | 2019 | Acinetobacter baumannii/enzymology/*genetics/metabolism, Bacterial Capsules/chemistry/metabolism, Bacterial Proteins/genetics/metabolism, Carbohydrate Sequence, Evolution, Molecular, Genome, Bacterial, Glycosyltransferases/*genetics/metabolism, Multigene Family, Polysaccharides, Bacterial/biosynthesis/*chemistry, Whole Genome Sequencing | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 33359 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110428 | Collection of Institut Pasteur (CIP 110428) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 92184 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412935.1 |