Strain identifier

BacDive ID: 134717

Type strain: No

Species: Acinetobacter baumannii

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146

NCBI tax ID(s): 1217639 (strain), 470 (species)

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For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 33359

BacDive-ID: 134717

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Acinetobacter baumannii CIP 110428 is a mesophilic, Gram-negative bacterium of the family Moraxellaceae.

NCBI tax id

NCBI tax idMatching level
1217639strain
470species

strain history

@refhistory
333592012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146
33359CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 146

doi: 10.13145/bacdive134717.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter baumannii
  • full scientific name: Acinetobacter baumannii Bouvet and Grimont 1986

@ref: 33359

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter baumannii

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative99.998
33359negativeoval-shapedno

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
33359MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
33359CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

  • @ref: 33359
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.995

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
33359PrahaCzech RepublicCZEEurope
33359PragueCzech RepublicCZEEuropeHuman, Wound1993

Safety information

risk assessment

  • @ref: 33359
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter baumannii NIPH 146GCA_000368185scaffoldncbi1217639
66792Acinetobacter baumannii NIPH 1461217639.3wgspatric1217639
66792Acinetobacter baumannii NIPH 1462534681908draftimg1217639

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno91.591no
flagellatedno94.385no
gram-positiveno97.098no
anaerobicno98.84no
aerobicyes95.234no
halophileno91.1no
spore-formingno96.952no
thermophileno99.817yes
glucose-utilno65.248no
glucose-fermentno79.163no

External links

@ref: 33359

culture collection no.: CIP 110428, NIPH 146

straininfo link

  • @ref: 92184
  • straininfo: 412935

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics26057991Structure of the neutral capsular polysaccharide of Acinetobacter baumannii NIPH146 that carries the KL37 capsule gene cluster.Arbatsky NP, Shneider MM, Kenyon JJ, Shashkov AS, Popova AV, Miroshnikov KA, Volozhantsev NV, Knirel YACarbohydr Res10.1016/j.carres.2015.05.0032015Acinetobacter baumannii/*chemistry/*genetics, Bacterial Capsules/*chemistry/*genetics, Carbohydrate Sequence, Genetic Loci/genetics, Molecular Sequence Data, Polysaccharides, Bacterial/*chemistry
Metabolism31421354Acinetobacter baumannii K116 capsular polysaccharide structure is a hybrid of the K14 and revised K37 structures.Shashkov AS, Cahill SM, Arbatsky NP, Westacott AC, Kasimova AA, Shneider MM, Popova AV, Shagin DA, Shelenkov AA, Mikhailova YV, Yanushevich YG, Edelstein MV, Kenyon JJ, Knirel YACarbohydr Res10.1016/j.carres.2019.1077742019Acinetobacter baumannii/enzymology/*genetics/metabolism, Bacterial Capsules/chemistry/metabolism, Bacterial Proteins/genetics/metabolism, Carbohydrate Sequence, Evolution, Molecular, Genome, Bacterial, Glycosyltransferases/*genetics/metabolism, Multigene Family, Polysaccharides, Bacterial/biosynthesis/*chemistry, Whole Genome SequencingGenetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
33359Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110428Collection of Institut Pasteur (CIP 110428)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
92184Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID412935.1