Acinetobacter baumannii CIP 110437 is a mesophilic, Gram-negative, rod-shaped prokaryote of the family Moraxellaceae.
Gram-negative rod-shaped mesophilic genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Moraxellaceae |
| Genus Acinetobacter |
| Species Acinetobacter baumannii |
| Full scientific name Acinetobacter baumannii Bouvet and Grimont 1986 |
| @ref | Name | Growth | Composition | Medium link | |
|---|---|---|---|---|---|
| 33687 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 33687 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 33687 | positive | growth | 30 | mesophilic |
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 33687 | 1 | Risk group (French classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | Acin_baum_NIPH_601_V1 assembly for Acinetobacter baumannii NIPH 601 | scaffold | 1217637 | 74.75 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 99.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 79.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 65.30 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 98.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 97.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.39 | no |
| 125438 | aerobic | aerobicⓘ | yes | 90.21 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 93.40 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.98 | no |
| 125438 | flagellated | motile2+ⓘ | no | 76.37 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| K2 Capsule Depolymerase Is Highly Stable, Is Refractory to Resistance, and Protects Larvae and Mice from Acinetobacter baumannii Sepsis. | Oliveira H, Mendes A, Fraga AG, Ferreira A, Pimenta AI, Mil-Homens D, Fialho AM, Pedrosa J, Azeredo J. | Appl Environ Microbiol | 10.1128/aem.00934-19 | 2019 | ||
| Metabolism | Functional Analysis and Antivirulence Properties of a New Depolymerase from a Myovirus That Infects Acinetobacter baumannii Capsule K45. | Oliveira H, Costa AR, Ferreira A, Konstantinides N, Santos SB, Boon M, Noben JP, Lavigne R, Azeredo J. | J Virol | 10.1128/jvi.01163-18 | 2019 | |
| Metabolism | Creatine utilization as a sole nitrogen source in Pseudomonas putida KT2440 is transcriptionally regulated by CahR. | Hinkel LA, Willsey GG, Lenahan SM, Eckstrom K, Schutz KC, Wargo MJ. | Microbiology (Reading) | 10.1099/mic.0.001145 | 2022 | |
| Phylogeny | Lytic Capsule-Specific Acinetobacter Bacteriophages Encoding Polysaccharide-Degrading Enzymes. | Evseev PV, Sukhova AS, Tkachenko NA, Skryabin YP, Popova AV. | Viruses | 10.3390/v16050771 | 2024 | |
| Pathogenicity | Novel Acinetobacter baumannii Myovirus TaPaz Encoding Two Tailspike Depolymerases: Characterization and Host-Recognition Strategy. | Shchurova AS, Shneider MM, Arbatsky NP, Shashkov AS, Chizhov AO, Skryabin YP, Mikhaylova YV, Sokolova OS, Shelenkov AA, Miroshnikov KA, Knirel YA, Popova AV. | Viruses | 10.3390/v13060978 | 2021 | |
| Database for the ampC alleles in Acinetobacter baumannii. | Karah N, Jolley KA, Hall RM, Uhlin BE. | PLoS One | 10.1371/journal.pone.0176695 | 2017 | ||
| Pathogenicity | Deciphering Multifactorial Resistance Phenotypes in Acinetobacter baumannii by Genomics and Targeted Label-free Proteomics. | Cecchini T, Yoon EJ, Charretier Y, Bardet C, Beaulieu C, Lacoux X, Docquier JD, Lemoine J, Courvalin P, Grillot-Courvalin C, Charrier JP. | Mol Cell Proteomics | 10.1074/mcp.ra117.000107 | 2018 | |
| Genetics | Development and evaluation of a core genome multilocus typing scheme for whole-genome sequence-based typing of Acinetobacter baumannii. | Higgins PG, Prior K, Harmsen D, Seifert H. | PLoS One | 10.1371/journal.pone.0179228 | 2017 | |
| Genetics | The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. | Repizo GD, Viale AM, Borges V, Cameranesi MM, Taib N, Espariz M, Brochier-Armanet C, Gomes JP, Salcedo SP. | Genome Biol Evol | 10.1093/gbe/evx162 | 2017 | |
| Phylogeny | Identification of 50 class D beta-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp. | Perichon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.01261-13 | 2014 | |
| Metabolism | Contact-dependent growth inhibition systems in Acinetobacter. | De Gregorio E, Zarrilli R, Di Nocera PP. | Sci Rep | 10.1038/s41598-018-36427-8 | 2019 | |
| The population structure of Acinetobacter baumannii: expanding multiresistant clones from an ancestral susceptible genetic pool. | Diancourt L, Passet V, Nemec A, Dijkshoorn L, Brisse S. | PLoS One | 10.1371/journal.pone.0010034 | 2010 | ||
| Phylogeny | O-antigen diversity among Acinetobacter baumannii strains from the Czech Republic and Northwestern Europe, as determined by lipopolysaccharide-specific monoclonal antibodies. | Pantophlet R, Nemec A, Brade L, Brade H, Dijkshoorn L. | J Clin Microbiol | 10.1128/jcm.39.7.2576-2580.2001 | 2001 | |
| Enzymology | Related structures of neutral capsular polysaccharides of Acinetobacter baumannii isolates that carry related capsule gene clusters KL43, KL47, and KL88. | Shashkov AS, Kenyon JJ, Arbatsky NP, Shneider MM, Popova AV, Miroshnikov KA, Hall RM, Knirel YA | Carbohydr Res | 10.1016/j.carres.2016.10.007 | 2016 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #33687 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110437 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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