Name: Rhizobium sp. Root708
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132789

Type strain:

Species: Rhizobium sp.

Strain Designation: Root708

Culture col. no.: DSM 102529

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root708 <- Y. Bai

NCBI tax ID(s): 391 (species)

SI-ID 397424

DSM 102529

Special Collections

Other strains from Rhizobium sp.

Section

Rhizobium sp. Root708 is a Gram-negative bacterium that was isolated from roots of wild-type Arabidopsis thaliana plants.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Full Scientific Name (LPSN)	Rhizobium Frank 1889 (Approved Lists 1980)

	Synonym	"Heterorhizobium"
	Synonym	"Paenirhizobium"
	Synonym	"Alirhizobium"
	Synonym	Peteryoungia

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.333

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24578]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #24578]

Culture medium growth

[Ref.: #24578]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24578]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24578]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %91.505

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24578]	Sample type/isolated from	roots of wild-type Arabidopsis thaliana plants
[Ref.: #24578]	Host species	Arabidopsis thaliana
[Ref.: #24578]	Geographic location (country and/or sea, region)	Saint-Évarzec (47.941N 04.012W)
[Ref.: #24578]	Country	France
[Ref.: #24578]	Country ISO 3 Code	FRA
[Ref.: #24578]	Continent	Europe
[Ref.: #24578]	Geographic location	47.9410°/-4.0120°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium sp. Root708	GCA_001429725	scaffold	GenBank ENA	1736592 tax ID	*
[Ref.: #66792]	Rhizobium sp. Root708	1736592.3	wgs	PATRIC	1736592 tax ID	*
[Ref.: #66792]	Rhizobium sp. Root708	2643221599	draft	JGI IMG/M	1736592 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium sp. Root708 Root708 NCBI: GCA_001429725.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.333	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.637	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.376	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.505	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.25	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	69.282	no

Availability in culture collections External links

[Ref.: #24578]

Culture collection no.

DSM 102529

[Ref.: #91085]

SI-ID 397424

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24578

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102529

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91085

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397424.1 )

* These data were automatically processed and therefore are not curated

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Rhizobium sp. Root708 Root708

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