Cite this strain

Rhizobium sp. (JCM 28634)

Name: Rhizobium sp. (JCM 28634)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163528

Type strain

Culture col. no. JCM 28634

NCBI tax ID(s) 1818738

Special Collections JCM

History JCM <-- T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; K5916-2-3b.

Links

JCM 28634 is a bacterium that was isolated from Umbonal substances on the south wall in the stone chamber.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 131621

JCM 28634

@ref 20215

Last LPSN update 2026-05-29 08:45:11

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Full scientific name Rhizobium Frank 1889 (Approved Lists 1980)

Synonyms (8)

Velazquezella
Arminella
Martinezella
Limnomicrobium
Phytoamicus
"Metarhizobium"
Paenirhizobium
Peteryoungia

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Umbonal substances on the south wall in the stone chamber	Kitora Tumulus, Asuka Village, Nara Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC133665 (>99% sequence identity) for Agrobacterium from Microbeatlas

Aquatic Samples	822
Soil Samples	595
Animal Samples	3746
Plant Samples	731
Total Samples	5894

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Rhizobium sp. JCM 28634 gene for 16S ribosomal RNA, partial sequence	LC133665	1445		1818738

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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