Cite this strain

Rhizobium sp. (JCM 28653)

Name: Rhizobium sp. (JCM 28653)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163543

Type strain

Culture col. no. JCM 28653

NCBI tax ID(s) 1818757

Special Collections JCM

History T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; K8617-4-1b.

Links

JCM 28653 is a mesophilic prokaryote that was isolated from Black viscous gels in a crack of the ceiling stone in the stone chamber.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 359512

JCM 28653

@ref 20215

Last LPSN update 2026-02-09 11:39:38

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Rhizobiaceae

Genus Rhizobium

Full scientific name Rhizobium Frank 1889 (Approved Lists 1980)

Synonyms (2)

Peteryoungia
Paenirhizobium

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Black viscous gels in a crack of the ceiling stone in the stone chamber	Kitora Tumulus, Asuka Village, Nara Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC133684 (>99% sequence identity) for Agrobacterium from Microbeatlas

Aquatic Samples	822
Soil Samples	595
Animal Samples	3746
Plant Samples	731
Total Samples	5894

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Rhizobium sp. JCM 28653 gene for 16S ribosomal RNA, partial sequence	LC133684	1445		1818757

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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