Name: Rhizobium sp. JCM 28653
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163543

Type strain:

Species: Rhizobium sp.

Culture col. no.: JCM 28653

Strain history: T. Tateishi; Agency for Cultural Affairs, Japan <-- R. Kigawa and J. Sugiyama; Natl. Res. Inst. for Cult. Prop., Tokyo and TechnoSuruga Lab. Co., Ltd., Japan; K8617-4-1b.

NCBI tax ID(s): 1818757 (species)

Special Collections

Other strains from Rhizobium sp.

Section

Rhizobium sp. JCM 28653 is a bacterium that was isolated from Black viscous gels in a crack of the ceiling stone in the stone chamber.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Full Scientific Name (LPSN)	Rhizobium Frank 1889 (Approved Lists 1980)

	Synonym	"Heterorhizobium"
	Synonym	"Paenirhizobium"
	Synonym	"Alirhizobium"
	Synonym	Peteryoungia

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Black viscous gels in a crack of the ceiling stone in the stone chamber
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kitora Tumulus, Asuka Village, Nara Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LC133684 (>99% sequence identity) for Agrobacterium from Microbeatlas

Aquatic Samples	822
Soil Samples	595
Animal Samples	3746
Plant Samples	731
Total Samples	5894

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobium sp. JCM 28653 gene for 16S ribosomal RNA, partial sequence	LC133684	1445	GenBank ENA	1818757 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 28653

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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