Name: Rhizobium sp. JCM 5500
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165266

Type strain:

Species: Rhizobium sp.

Culture col. no.: JCM 5500

Strain history: P.-P. Chang 115 <-- S. Ikemoto KS 0178 <-- S. Ikemoto NP4-6-2-2.

NCBI tax ID(s): 1118465 (species)

Other strains from Rhizobium sp.

R. sp. 4794, DSM 30204, DSM 60573, ICPB ...
R. sp. AM.1, DSM 1725
R. sp. 176A30, DSM 2729, TAL 169
R. sp. 3402, DSM 2914
R. sp. 16653, 3 C1a1, DSM 6049, ATCC 10316
R. sp. 312b1, 36-1, DSM 6050, ATCC 10317
R. sp. 32H1, DSM 6051, ATCC 33848
R. sp. Haole Koa, DSM 6052, ATCC 35645, ...
R. sp. B6S3, B₆S₃, ...
R. sp. M3 A, DSM 10169
R. sp. DSM 11272, LMG 7854, ORS 1002
R. sp. AUEB20, DSM 11419
R. sp. PATR, DSM 11830
R. sp. ST032936(HKI), S019,
R. sp. ST022282(HKI), F105, Nü36, P480, ...
R. sp. ST032964(HKI), S048,
R. sp. SF005649(FSU),
R. sp. TCK, DSM 13828
R. sp. Root73, DSM 102530
R. sp. Root708, DSM 102529
R. sp. Root1203, DSM 102516
R. sp. Root1204, DSM 102517
R. sp. Root1240, DSM 102519
R. sp. Root1334, DSM 102520
R. sp. Root149, DSM 102521
R. sp. Root274, DSM 102522
R. sp. Root336D1, DSM 102523
R. sp. Root482, DSM 102524
R. sp. Root483D2, DSM 102525
R. sp. Root491, DSM 102526
R. sp. Root564, DSM 102527
R. sp. Root651, DSM 102528
R. sp. Leaf453, DSM 102699
R. sp. Leaf262, DSM 102700
R. sp. Leaf311, DSM 102701
R. sp. Leaf321, DSM 102702
R. sp. Leaf391, DSM 102703
R. sp. Leaf386, DSM 102704
R. sp. Leaf384, DSM 102705
R. sp. Leaf383, DSM 102706
R. sp. Leaf371, DSM 102707
R. sp. Leaf341, DSM 102708
R. sp. Leaf306, DSM 102709
R. sp. Leaf202, DSM 102710
R. sp. Leaf155, DSM 102711
R. sp. Leaf167, DSM 102712
R. sp. Leaf68, DSM 102713
R. sp. CCUG 2076, CCM 2187, ATCC 12210
R. sp. CCUG 2871
R. sp. CCUG 3547
R. sp. CCUG 6596
R. sp. CCUG 6723
R. sp. CCUG 7354 A
R. sp. CCUG 7777
R. sp. CCUG 7807
R. sp. CCUG 9501
R. sp. CCUG 11148
R. sp. CCUG 13203 A
R. sp. CCUG 30275
R. sp. CCUG 33752
R. sp. DSM 29929, EGI 60011
R. sp. NT-25, DSM 106347
R. sp. Q54, DSM 106353, CCTCC AB 2013039
R. sp. DSM 27231, YIM 101135, BCRC 80642
R. sp. DSM 102088, BGMRC 2050
R. sp. PP-F2F-G48, DSM 103621
R. sp. LNNU114113, DSM 103960
R. sp. Khangiran2, DSM 106339
R. sp. NT-26, DSM 106348, CFBP 8663
R. sp. JCM 20977, IAM 13635, NZP 5067
R. sp. JCM 21085, IAM 14227
R. sp. JCM 21086, IAM 14228
R. sp. JCM 21087, IAM 14229
R. sp. JCM 21089, IAM 14231
R. sp. JCM 28263
R. sp. JCM 28634
R. sp. JCM 28644
R. sp. JCM 28648
R. sp. JCM 28653
R. sp. JCM 28659
R. sp. JCM 28672
R. sp. JCM 31363
R. sp. JCM 31364
R. sp. JCM 5501
R. sp. JCM 5502
R. sp. JCM 5504
R. sp. VSW331, DSM 103072, KCTC 32415, ...

Section

Rhizobium sp. JCM 5500 is a mesophilic bacterium of the family Rhizobiaceae.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Full Scientific Name (LPSN)	Rhizobium Frank 1889 (Approved Lists 1980)

	Synonym	"Heterorhizobium"
	Synonym	"Paenirhizobium"
	Synonym	"Alirhizobium"
	Synonym	Peteryoungia

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AB685695 (>99% sequence identity) for Agrobacterium from Microbeatlas

Aquatic Samples	6
Soil Samples	7
Animal Samples	33
Plant Samples	42
Total Samples	88

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Rhizobium sp. JCM 5500 gene for 16S ribosomal RNA, partial sequence	AB685695	1407	ENA	1118465 tax ID

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 5500

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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