Name: Rhizobium sp. Q54
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159039

Type strain:

Species: Rhizobium sp.

Strain Designation: Q54

Culture col. no.: DSM 106353, CCTCC AB 2013039

Strain history: <- J. Santos, Univ. College London, Inst. of Structural & Molecular Biology, United Kingdom; Q54 <- J. Zhang, Nanjing Agric. Univ., China

NCBI tax ID(s): 391 (species)

SI-ID 407880

DSM 106353

Other strains from Rhizobium sp.

R. sp. 4794, DSM 30204, DSM 60573, ICPB ...
R. sp. AM.1, DSM 1725
R. sp. 176A30, DSM 2729, TAL 169
R. sp. 3402, DSM 2914
R. sp. 16653, 3 C1a1, DSM 6049, ATCC 10316
R. sp. 312b1, 36-1, DSM 6050, ATCC 10317
R. sp. 32H1, DSM 6051, ATCC 33848
R. sp. Haole Koa, DSM 6052, ATCC 35645, ...
R. sp. B6S3, B₆S₃, ...
R. sp. M3 A, DSM 10169
R. sp. DSM 11272, LMG 7854, ORS 1002
R. sp. AUEB20, DSM 11419
R. sp. PATR, DSM 11830
R. sp. ST032936(HKI), S019,
R. sp. ST022282(HKI), F105, Nü36, P480, ...
R. sp. ST032964(HKI), S048,
R. sp. SF005649(FSU),
R. sp. TCK, DSM 13828
R. sp. Root73, DSM 102530
R. sp. Root708, DSM 102529
R. sp. Root1203, DSM 102516
R. sp. Root1204, DSM 102517
R. sp. Root1240, DSM 102519
R. sp. Root1334, DSM 102520
R. sp. Root149, DSM 102521
R. sp. Root274, DSM 102522
R. sp. Root336D1, DSM 102523
R. sp. Root482, DSM 102524
R. sp. Root483D2, DSM 102525
R. sp. Root491, DSM 102526
R. sp. Root564, DSM 102527
R. sp. Root651, DSM 102528
R. sp. Leaf453, DSM 102699
R. sp. Leaf262, DSM 102700
R. sp. Leaf311, DSM 102701
R. sp. Leaf321, DSM 102702
R. sp. Leaf391, DSM 102703
R. sp. Leaf386, DSM 102704
R. sp. Leaf384, DSM 102705
R. sp. Leaf383, DSM 102706
R. sp. Leaf371, DSM 102707
R. sp. Leaf341, DSM 102708
R. sp. Leaf306, DSM 102709
R. sp. Leaf202, DSM 102710
R. sp. Leaf155, DSM 102711
R. sp. Leaf167, DSM 102712
R. sp. Leaf68, DSM 102713
R. sp. CCUG 2076, CCM 2187, ATCC 12210
R. sp. CCUG 2871
R. sp. CCUG 3547
R. sp. CCUG 6596
R. sp. CCUG 6723
R. sp. CCUG 7354 A
R. sp. CCUG 7777
R. sp. CCUG 7807
R. sp. CCUG 9501
R. sp. CCUG 11148
R. sp. CCUG 13203 A
R. sp. CCUG 30275
R. sp. CCUG 33752
R. sp. DSM 29929, EGI 60011
R. sp. NT-25, DSM 106347
R. sp. DSM 27231, YIM 101135, BCRC 80642
R. sp. DSM 102088, BGMRC 2050
R. sp. PP-F2F-G48, DSM 103621
R. sp. LNNU114113, DSM 103960
R. sp. Khangiran2, DSM 106339
R. sp. NT-26, DSM 106348, CFBP 8663
R. sp. JCM 20977, IAM 13635, NZP 5067
R. sp. JCM 21085, IAM 14227
R. sp. JCM 21086, IAM 14228
R. sp. JCM 21087, IAM 14229
R. sp. JCM 21089, IAM 14231
R. sp. JCM 28263
R. sp. JCM 28634
R. sp. JCM 28644
R. sp. JCM 28648
R. sp. JCM 28653
R. sp. JCM 28659
R. sp. JCM 28672
R. sp. JCM 31363
R. sp. JCM 31364
R. sp. JCM 5500
R. sp. JCM 5501
R. sp. JCM 5502
R. sp. JCM 5504
R. sp. VSW331, DSM 103072, KCTC 32415, ...

Section

Rhizobium sp. Q54 is a mesophilic, Gram-negative bacterium that was isolated from paddy soil contaminated with arsenic due to geogenic reasons.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Full Scientific Name (LPSN)	Rhizobium Frank 1889 (Approved Lists 1980)

	Synonym	"Heterorhizobium"
	Synonym	"Paenirhizobium"
	Synonym	"Alirhizobium"
	Synonym	Peteryoungia

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65862]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #65862]

Culture medium growth

[Ref.: #65862]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65862]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #65862]			growth	28 °C

[Ref.: #65862]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65862]	Sample type/isolated from	paddy soil contaminated with arsenic due to geogenic reasons
[Ref.: #65862]	Geographic location (country and/or sea, region)	Qiyang city, Hunan province
[Ref.: #65862]	Country	China
[Ref.: #65862]	Country ISO 3 Code	CHN
[Ref.: #65862]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Paddy (Ricefield)
#Environmental	#Terrestrial	#Soil
#Engineered	#Contamination	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65862]	Rhizobium sp. Q54 16S ribosomal RNA gene, partial sequence	KC904960.1	1357	ENA	1335060 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhizobium sp. Q54	GCA_902153285	complete	GenBank	1335060 tax ID	*
[Ref.: #66792]	Rhizobium sp. Q54	1335060.3	complete	PATRIC	1335060 tax ID	*
[Ref.: #66792]	Rhizobium sp. Q54	2896564473	complete	JGI IMG/M	1335060 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Rhizobium sp. Q54 PATRIC: 1335060.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhizobium sp. Q54 Q54 NCBI: GCA_902153285.1
[Ref.: #69480]	flagellated	no	65.204	no
[Ref.: #69480]	gram-positive	no	98.122	no
[Ref.: #69480]	anaerobic	no	95.546	no
[Ref.: #69480]	aerobic	yes	88.772	no
[Ref.: #69480]	halophile	no	82.434	no
[Ref.: #69480]	spore-forming	no	94.756	no
[Ref.: #69480]	thermophile	no	98.145	yes
[Ref.: #69480]	glucose-util	yes	90.458	no
[Ref.: #69480]	motile	yes	86.619	no
[Ref.: #69480]	glucose-ferment	no	90.32	no
[Ref.: #69480]	flagellated	no	65.204	no
[Ref.: #69480]	gram-positive	no	98.122	no
[Ref.: #69480]	anaerobic	no	95.546	no
[Ref.: #69480]	aerobic	yes	88.772	no
[Ref.: #69480]	halophile	no	82.434	no
[Ref.: #69480]	spore-forming	no	94.756	no
[Ref.: #69480]	thermophile	no	98.145	yes
[Ref.: #69480]	glucose-util	yes	90.458	no
[Ref.: #69480]	motile	yes	86.619	no
[Ref.: #69480]	glucose-ferment	no	90.32	no

Availability in culture collections External links

[Ref.: #65862]

Culture collection no.

DSM 106353, CCTCC AB 2013039

[Ref.: #111553]

SI-ID 407880

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65862

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106353

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111553

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407880.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Rhizobium sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Rhizobium sp. Q54

Rhizobium sp. Q54 Q54

Change proposal

Change proposal