Name: Pseudorhizobium banfieldiae NT-26
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 160168

Type strain:

Species: Pseudorhizobium banfieldiae

Strain Designation: NT-26

Culture col. no.: DSM 106348, CFBP 8663

Strain history: <- J. M. Santini, Univ. College London, Inst. of Structural & Molecular Biology, United Kingdom; NT-26 <- La Trobe University, Victoria, Australia

NCBI tax ID(s): 391 (species)

SI-ID 401384

DSM 106348

Section

Pseudorhizobium banfieldiae NT-26 is a mesophilic, Gram-negative bacterium that was isolated from Moist arsenopyrite-contaiing rock.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Pseudorhizobium*
	Species	**Pseudorhizobium banfieldiae**
	Full Scientific Name (LPSN)	Pseudorhizobium banfieldiae Lassalle et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.992

Information on culture and growth conditions Culture and growth conditions

[Ref.: #67072]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #67072]

Culture medium growth

[Ref.: #67072]

Culture medium link

Medium recipe at MediaDive

[Ref.: #67072]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #67072]			growth	28 °C

[Ref.: #67072]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67072]	Sample type/isolated from	Moist arsenopyrite-contaiing rock
[Ref.: #67072]	Geographic location (country and/or sea, region)	Granites goldmine, Northern Territory
[Ref.: #67072]	Country	Australia
[Ref.: #67072]	Country ISO 3 Code	AUS
[Ref.: #67072]	Continent	Australia and Oceania
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AF159453 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	2466
Soil Samples	5093
Animal Samples	4303
Plant Samples	1732
Total Samples	13594

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67072]	Rhizobium sp. NT-26 16S ribosomal RNA gene, partial sequence	AF159453	1478	ENA	1125847 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudorhizobium banfieldiae NT-26	GCA_000967425	complete	GenBank	1125847 tax ID	*
[Ref.: #66792]	Rhizobium sp. NT-26	1125847.5	plasmid	PATRIC	1125847 tax ID	*
[Ref.: #66792]	Rhizobium sp. NT-26	1125847.6	plasmid	PATRIC	1125847 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudorhizobium banfieldiae NT-26 NCBI: GCA_000967425.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudorhizobium banfieldiae NT-26 NCBI: GCA_000967425.1
[Ref.: #69480]	motile	yes	85.375	no
[Ref.: #69480]	flagellated	no	61.927	no
[Ref.: #69480]	gram-positive	no	98.203	no
[Ref.: #69480]	anaerobic	no	94.565	no
[Ref.: #69480]	aerobic	yes	89.276	no
[Ref.: #69480]	halophile	no	76.412	no
[Ref.: #69480]	spore-forming	no	94.93	no
[Ref.: #69480]	thermophile	no	98.66	yes
[Ref.: #69480]	glucose-util	yes	88.455	no
[Ref.: #69480]	glucose-ferment	no	91.471	no

Availability in culture collections External links

[Ref.: #67072]

Culture collection no.

DSM 106348, CFBP 8663

[Ref.: #112441]

SI-ID 401384

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Structural and Functional Investigation of the Periplasmic Arsenate-Binding Protein ArrX from Chrysiogenes arsenatis.	Poddar N, Badilla C, Maghool S, Osborne TH, Santini JM, Maher MJ	Biochemistry	10.1021/acs.biochem.0c00555	2021	*
Phylogeny	Phylogenomics reveals the basis of adaptation of Pseudorhizobium species to extreme environments and supports a taxonomic revision of the genus.	Lassalle F, Dastgheib SMM, Zhao FJ, Zhang J, Verbarg S, Fruhling A, Brinkmann H, Osborne TH, Sikorski J, Balloux F, Didelot X, Santini JM, Petersen J	Syst Appl Microbiol	10.1016/j.syapm.2020.126165	2020	*
Metabolism	Expression of the arsenite oxidation regulatory operon in Rhizobium sp. str. NT-26 is under the control of two promoters that respond to different environmental cues.	Corsini PM, Walker KT, Santini JM	Microbiologyopen	10.1002/mbo3.567	2017	*
Metabolism	Electron transfer through arsenite oxidase: Insights into Rieske interaction with cytochrome c.	Watson C, Niks D, Hille R, Vieira M, Schoepp-Cothenet B, Marques AT, Romao MJ, Santos-Silva T, Santini JM	Biochim Biophys Acta Bioenerg	10.1016/j.bbabio.2017.08.003	2017	*
Enzymology	The active site structure and catalytic mechanism of arsenite oxidase.	Warelow TP, Pushie MJ, Cotelesage JJH, Santini JM, George GN	Sci Rep	10.1038/s41598-017-01840-y	2017	*
Metabolism	Arsenite oxidase also functions as an antimonite oxidase.	Wang Q, Warelow TP, Kang YS, Romano C, Osborne TH, Lehr CR, Bothner B, McDermott TR, Santini JM, Wang G	Appl Environ Microbiol	10.1128/AEM.02981-14	2015	*
Enzymology	The respiratory arsenite oxidase: structure and the role of residues surrounding the rieske cluster.	Warelow TP, Oke M, Schoepp-Cothenet B, Dahl JU, Bruselat N, Sivalingam GN, Leimkuhler S, Thalassinos K, Kappler U, Naismith JH, Santini JM	PLoS One	10.1371/journal.pone.0072535	2013	*
Enzymology	Electrochemically driven catalysis of Rhizobium sp. NT-26 arsenite oxidase with its native electron acceptor cytochrome c552.	Kalimuthu P, Heath MD, Santini JM, Kappler U, Bernhardt PV	Biochim Biophys Acta	10.1016/j.bbabio.2013.07.010	2013	*
Phylogeny	Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.	Andres J, Arsene-Ploetze F, Barbe V, Brochier-Armanet C, Cleiss-Arnold J, Coppee JY, Dillies MA, Geist L, Joublin A, Koechler S, Lassalle F, Marchal M, Medigue C, Muller D, Nesme X, Plewniak F, Proux C, Ramirez-Bahena MH, Schenowitz C, Sismeiro O, Vallenet D, Santini JM, Bertin PN	Genome Biol Evol	10.1093/gbe/evt061	2013	*
Enzymology	Heterologously expressed arsenite oxidase: a system to study biogenesis and structure/function relationships of the enzyme family.	van Lis R, Nitschke W, Warelow TP, Capowiez L, Santini JM, Schoepp-Cothenet B	Biochim Biophys Acta	10.1016/j.bbabio.2012.06.001	2012	*
Enzymology	The small subunit AroB of arsenite oxidase: lessons on the [2Fe-2S] Rieske protein superfamily.	Duval S, Santini JM, Nitschke W, Hille R, Schoepp-Cothenet B	J Biol Chem	10.1074/jbc.M110.113811	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67072

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106348

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#112441

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401384.1 )

* These data were automatically processed and therefore are not curated

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