Pseudomonas chlororaphis subsp. aureofaciens (CCUG 712, CIP 103295, NCTC 10686)

Name: Pseudomonas chlororaphis subsp. aureofaciens (CCUG 712, CIP 103295, NCTC 10686)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13158

Type strain

Strain Designation EIII.9.25.1, L8

Culture col. no. CCUG 712 CIP 103295 NCTC 10686 LMG 1245 NRRL B-1576 10 more

NCBI tax ID(s) 1215095 587851

Special Collections DSMZ CCUG JCM CIP

History <- NCIMB IAM 12353 <-- IFO 3521 <-- NRRL B-1576 <-- A. J. Kluyver. CIP <- 1989, NCIMB, Pseudomonas aureofaciens <- Tech. Hoogeschool, Delft, The Netherlands: strain EIII.9.25.1 (= strain L8) <- A. Kluyver, Pseudomonas polychromogenes <- 1936, H. Bouman

Links

Pseudomonas chlororaphis subsp. aureofaciens EIII.9.25.1 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from Clay suspended in kerosene for three weeks.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 3935

LMG 1245,ATCC 13985,CCUG 712,IAM 12353,IFO 3521,NRRL B-1576,LMG 16909,DSM 6698,NCIMB 9030,NCTC 10686,CIP 103295,NCIB 9030,LMD 37.26,LMD 37.27,ICMP 13610,CECT 462,CCRC 11057,CFBP 2133,CCM 4973,NCCB 37026,NCCB 37027,NBRC 3521,BCRC 11057,KCTC 12349,NCIM 2026,CGMCC 1.3351,JCM 20509

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas chlororaphis subsp. aureofaciens

Full scientific name Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007

Synonyms (1)

Pseudomonas aureofaciens

BacDive ID	Other strains from **Pseudomonas chlororaphis subsp. aureofaciens** (7)	Type strain
12811	P. chlororaphis subsp. aureofaciens 305-STR-1-4, DSM 6508
12812	P. chlororaphis subsp. aureofaciens RW71, DSM 11437, DSM 12972
12813	P. chlororaphis subsp. aureofaciens DSM 50082, ATCC 13986, ICPB 2393, NRRL B-1543 ...
12814	P. chlororaphis subsp. aureofaciens DSM 50135, ATCC 17810, ICPB 2941-389, NRRL ...
12815	P. chlororaphis subsp. aureofaciens DSM 50136, ATCC 17811, ICPB 2942-390, NRRL ...
12816	P. chlororaphis subsp. aureofaciens DSM 50139, ATCC 17415, ICPB 2717-36, NRRL ...
131887	P. chlororaphis subsp. aureofaciens PT02, DSM 29578

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118246	negative	rod-shaped
125438			91.828
125438	negative		98.5
125439			90.3
125439	negative		99.4

Pigmentation

@ref	Production	Name
118246		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2775	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38123	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
118246	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
2775	positive	growth	25	mesophilic
38123	positive	growth	30	mesophilic
44248	positive	growth	28	mesophilic
67770	positive	growth	25	mesophilic
118246	positive	growth	5-37
118246	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
44248	aerobe
118246	obligate aerobe
125438	aerobe	92.966

Spore formation

@ref	Spore formation	Confidence
125439		98.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
118246	NaCl	positive	growth	0-6 %
118246	NaCl		growth	8 %
118246	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
118246	16947 ChEBI	citrate	+	carbon source
118246	4853 ChEBI	esculin	-	hydrolysis
118246	17632 ChEBI	nitrate	+	reduction
118246	17632 ChEBI	nitrate	-	respiration
118246	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118246	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118246	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118246	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118246	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
118246	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118246	caseinase	+	3.4.21.50
118246	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
118246	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118246	gelatinase	+/-
118246	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
118246	lipase	+
68382	lipase (C 14)	+		from API zym
118246	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118246	ornithine decarboxylase	-	4.1.1.17
118246	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
118246	tryptophan deaminase	-
118246	tween esterase	+
118246	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

44248

Fatty acid	Percentage	ECL
C16:0	28.5	16
C17:0 CYCLO	18.5	16.888
C16:1 ω7c	15.6	15.819
C18:1 ω7c /12t/9t	7.9	17.824
C10:0 3OH	6.7	11.423
C12:0 3OH	6.2	13.455
C12:0 2OH	5.7	13.178
C12:0	2.2	12
C14:0 3OH/C16:1 ISO I	1.2	15.485
C12:1 3OH	1.1	13.289
Unidentified	0.7	15.265
Unidentified	0.7	12.342
C18:1 ω9c	0.7	17.769
C18:2 ω6,9c/C18:0 ANTE	0.7	17.724
Unidentified	0.7	10.46
unknown 12.486	0.6	12.486
C14:0	0.6	14
Unidentified	0.5	9.969
C15:0	0.4	15
C19:0 CYCLO ω8c	0.4	18.9
Unidentified	0.3	11.183

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118246	-	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118246	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	+	+	+	-	+	-	-	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Laboratory	#Lab enrichment
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
44248	Clay suspended in kerosene for three weeks	1937	Maas river	Netherlands	NLD	Europe
67770	Clay of Maas River by kerosene enrichment
118246	Environment, Maas River Clay suspended in kerosene

Taxonmaps

69479

Global distribution of 16S sequence FJ652608 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	1
Soil Samples	3
Animal Samples	6
Plant Samples	3
Total Samples	13

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2775	1	Risk group (German classification) According to TRBA 466
118246	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM385190v1 assembly for Pseudomonas chlororaphis subsp. aureofaciens DSM 6698	complete	GCA_003851905	587851.14	2917825782	587851	96.27
66792	IMG-taxon 2636416064 annotated assembly for Pseudomonas chlororaphis ATCC 13985	chromosome	GCA_900104715	587753.24	2636416064	587753	86.19
67770	51765_B02 assembly for Pseudomonas chlororaphis NCTC10686	contig	GCA_900455495	587753.54	8045208478	587753	76.59
66792	ASM632202v2 assembly for Pseudomonas sp. ATCC 13985	contig	GCA_006322025	2578105.3		2578105	75.53
66792	ASM305768v2 assembly for Pseudomonas sp. RIT412	contig	GCA_003057685	587851.6	2886022041	587851	69.39
67770	ASM126957v1 assembly for Pseudomonas chlororaphis subsp. aureofaciens LMG 1245	contig	GCA_001269575	587851.3	2713897221	587851	68.34
67770	ASM81322v1 assembly for Pseudomonas chlororaphis subsp. aureofaciens NBRC 3521	contig	GCA_000813225	1215095.3	2645727751	1215095	65.47
66792	ASM880162v1 assembly for Pseudomonas chlororaphis subsp. aureofaciens CCUG 712	contig	GCA_008801625	587851.20		587851	54.29

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pseudomonas chlororaphis subsp. aureofaciens strain ATCC 13985 16S ribosomal RNA gene, partial sequence	AF094722	1458	587851
20218	Pseudomonas chlororaphis strain ATCC 13985 16S ribosomal RNA (rrsA) gene, partial sequence	FJ652608	1459	587753
2775	Pseudomonas chlororaphis subsp. aureofaciens strain DSM 6698 16S ribosomal RNA gene, complete sequence	AY509898	1530	587851
67770	Pseudomonas chlororaphis gene for 16S rRNA, partial sequence	D84008	1408	587753
124043	Pseudomonas chlororaphis subsp. aureofaciens gene for 16S rRNA, partial sequence, strain: NBRC 3521.	AB680099	1462	587851
124043	Pseudomonas chlororaphis subsp. aureofaciens 16S rRNA gene	Z76656	1436	587851
124043	Pseudomonas chlororaphis subsp. aureofaciens partial 16S rRNA gene, type strain ICMP 13610T	AJ308300	1329	587851

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas chlororaphis subsp. aureofaciens DSM 6698
NCBI: GCA_003851905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	78.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.40	no
125439	motility	BacteriaNetⓘ	yes	90.30	no
125439	spore_formation	BacteriaNetⓘ	no	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas chlororaphis subsp. aureofaciens DSM 6698
NCBI: GCA_003851905.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	99.30	no
125438	aerobic	aerobicⓘ	yes	92.97	yes
125438	spore-forming	spore-formingⓘ	no	83.27	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	yes	91.83	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum.	Chi SI, Akuma M, Xu R, Plante V, Hadinezhad M, Tambong JT.	Sci Rep	10.1038/s41598-024-71418-y	2024
	Tracing of Two Pseudomonas Strains in the Root and Rhizoplane of Maize, as Related to Their Plant Growth-Promoting Effect in Contrasting Soils.	Mosimann C, Oberhansli T, Ziegler D, Nassal D, Kandeler E, Boller T, Mader P, Thonar C.	Front Microbiol	10.3389/fmicb.2016.02150	2016
Metabolism	Different Ancestries of R Tailocins in Rhizospheric Pseudomonas Isolates.	Ghequire MG, Dillen Y, Lambrichts I, Proost P, Wattiez R, De Mot R.	Genome Biol Evol	10.1093/gbe/evv184	2015
Enzymology	NADP(+)-dependent D-threonine dehydrogenase from Pseudomonas cruciviae IFO 12047.	Misono H, Kato I, Packdibamrung K, Nagata S, Nagasaki S.	Appl Environ Microbiol	10.1128/aem.59.9.2963-2968.1993	1993
	Study on the source of nitrate in atmospheric particulate matter in Beijing using nitrogen and oxygen dual isotopes.	Zhen S, Luo M, Shao Y, Xu D, Ma L.	Sci Rep	10.1038/s41598-025-01179-9	2025
	Agronomic advantage of bacterial biological nitrogen fixation on wheat plant growth under contrasting nitrogen and phosphorus regimes.	Aasfar A, Meftah Kadmiri I, Azaroual SE, Lemriss S, Mernissi NE, Bargaz A, Zeroual Y, Hilali A.	Front Plant Sci	10.3389/fpls.2024.1388775	2024
	Stability of refrigerated miglustat after preparation in InOrpha(®) flavored suspending excipient for compounding of oral solutions and suspensions.	Riahi S, Ambuhl M, Stichler J, Bandilla D.	Drug Des Devel Ther	10.2147/dddt.s74497	2015
	Total substitution and partial modification of the set of non-ribosomal peptide synthetases clusters lead to pyoverdine diversity in the Pseudomonas fluorescens complex.	Grana-Miraglia L, Geney Higuita JL, Salazar JC, Guaya Iniguez D, Alcolado Leon C, Garcia-Angulo VA.	Front Microbiol	10.3389/fmicb.2024.1421749	2024
	Genome Sequence of Pseudomonas chlororaphis Lzh-T5, a Plant Growth-Promoting Rhizobacterium with Antimicrobial Activity.	Li Z, Li X, Zeng Q, Chen M, Liu D, Wang J, Shen L, Song F.	Genome Announc	10.1128/genomea.00328-18	2018
	Bacterial-Plant-Interactions: Approaches to Unravel the Biological Function of Bacterial Volatiles in the Rhizosphere.	Kai M, Effmert U, Piechulla B.	Front Microbiol	10.3389/fmicb.2016.00108	2016
Genetics	A Novel, Highly Related Jumbo Family of Bacteriophages That Were Isolated Against Erwinia.	Sharma R, Pielstick BA, Bell KA, Nieman TB, Stubbs OA, Yeates EL, Baltrus DA, Grose JH.	Front Microbiol	10.3389/fmicb.2019.01533	2019
Metabolism	Volatile-mediated killing of Arabidopsis thaliana by bacteria is mainly due to hydrogen cyanide.	Blom D, Fabbri C, Eberl L, Weisskopf L.	Appl Environ Microbiol	10.1128/aem.01968-10	2011
	Maximizing light-driven CO₂ and N₂ fixation efficiency in quantum dot-bacteria hybrids.	Guan X, Ersan S, Hu X, Atallah TL, Xie Y, Lu S, Cao B, Sun J, Wu K, Huang Y, Duan X, Caram JR, Yu Y, Park JO, Liu C.	Nat Catal	10.1038/s41929-022-00867-3	2022
	Comparative analysis of nitrogen concentrations and sources within a coastal urban bayou watershed: A multi-tracer approach.	Devereux R, Wan Y, Rackley JL, Fasselt V, Vivian DN.	Sci Total Environ	10.1016/j.scitotenv.2021.145862	2021
	Factors influencing the accuracy of the denitrifier method for determining the oxygen isotopic composition of nitrate.	Zhang M, Shi JC, Wu LS.	J Zhejiang Univ Sci B	10.1631/jzus.b1800197	2019
Metabolism	A novel pyrroloquinoline quinone-dependent 2-keto-D-glucose dehydrogenase from Pseudomonas aureofaciens.	Umezawa K, Takeda K, Ishida T, Sunagawa N, Makabe A, Isobe K, Koba K, Ohno H, Samejima M, Nakamura N, Igarashi K, Yoshida M.	J Bacteriol	10.1128/jb.02376-14	2015
	Microbial nitrification in throughfall of a Japanese cedar associated with archaea from the tree canopy.	Watanabe K, Kohzu A, Suda W, Yamamura S, Takamatsu T, Takenaka A, Koshikawa MK, Hayashi S, Watanabe M.	Springerplus	10.1186/s40064-016-3286-y	2016
Metabolism	Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances.	Sutka RL, Ostrom NE, Ostrom PH, Breznak JA, Gandhi H, Pitt AJ, Li F.	Appl Environ Microbiol	10.1128/aem.72.1.638-644.2006	2006
	Quantification of nitrogen reductase and nitrite reductase genes in soil of thinned and clear-cut Douglas-fir stands by using real-time PCR.	Levy-Booth DJ, Winder RS.	Appl Environ Microbiol	10.1128/aem.02188-09	2010
	Efficient recycling of nutrients in modern and past hypersaline environments.	Isaji Y, Kawahata H, Ogawa NO, Kuroda J, Yoshimura T, Jimenez-Espejo FJ, Makabe A, Shibuya T, Lugli S, Santulli A, Manzi V, Roveri M, Ohkouchi N.	Sci Rep	10.1038/s41598-019-40174-9	2019
Metabolism	Diversity and evolution of the phenazine biosynthesis pathway.	Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS.	Appl Environ Microbiol	10.1128/aem.02009-09	2010
Pathogenicity	Conservation of the multidrug resistance efflux gene oprM in Pseudomonas aeruginosa.	Bianco N, Neshat S, Poole K.	Antimicrob Agents Chemother	10.1128/aac.41.4.853	1997
	The contamination of commercial 15N2 gas stocks with 15N-labeled nitrate and ammonium and consequences for nitrogen fixation measurements.	Dabundo R, Lehmann MF, Treibergs L, Tobias CR, Altabet MA, Moisander PH, Granger J.	PLoS One	10.1371/journal.pone.0110335	2014
	Freeze-thaw tolerance and clues to the winter survival of a soil community.	Walker VK, Palmer GR, Voordouw G.	Appl Environ Microbiol	10.1128/aem.72.3.1784-1792.2006	2006
Metabolism	Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1.	Mavrodi DV, Bonsall RF, Delaney SM, Soule MJ, Phillips G, Thomashow LS.	J Bacteriol	10.1128/jb.183.21.6454-6465.2001	2001
Metabolism	Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers.	Ye RW, Fries MR, Bezborodnikov SG, Averill BA, Tiedje JM.	Appl Environ Microbiol	10.1128/aem.59.1.250-254.1993	1993
Metabolism	Activity and three-dimensional distribution of toluene-degrading Pseudomonas putida in a multispecies biofilm assessed by quantitative in situ hybridization and scanning confocal laser microscopy.	Moller S, Pedersen AR, Poulsen LK, Arvin E, Molin S.	Appl Environ Microbiol	10.1128/aem.62.12.4632-4640.1996	1996
	Comparison of ATPase-encoding type III secretion system hrcN genes in biocontrol fluorescent Pseudomonads and in phytopathogenic proteobacteria.	Rezzonico F, Defago G, Moenne-Loccoz Y.	Appl Environ Microbiol	10.1128/aem.70.9.5119-5131.2004	2004
	Outer Membrane Protein Heterogeneity within Pseudomonas fluorescens and P. putida and Use of an OprF Antibody as a Probe for rRNA Homology Group I Pseudomonads.	Kragelund L, Leopold K, Nybroe O.	Appl Environ Microbiol	10.1128/aem.62.2.480-485.1996	1996
Metabolism	Role of the Tat ransport system in nitrous oxide reductase translocation and cytochrome cd1 biosynthesis in Pseudomonas stutzeri.	Heikkila MP, Honisch U, Wunsch P, Zumft WG.	J Bacteriol	10.1128/jb.183.5.1663-1671.2001	2001
Phylogeny	Biodiversity of denitrifying and dinitrogen-fixing bacteria in an acid forest soil.	Rosch C, Mergel A, Bothe H.	Appl Environ Microbiol	10.1128/aem.68.8.3818-3829.2002	2002
Genetics	Comprehensive genome analysis of Pseudomonas sp. SWRIQ11, a new plant growth-promoting bacterium that alleviates salinity stress in olive.	Zamanzadeh-Nasrabadi SM, Mohammadiapanah F, Sarikhan S, Shariati V, Saghafi K, Hosseini-Mazinani M.	3 Biotech	10.1007/s13205-023-03755-0	2023
Metabolism	A simple and rapid GC/MS method for the simultaneous determination of gaseous metabolites.	Isobe K, Koba K, Ueda S, Senoo K, Harayama S, Suwa Y	J Microbiol Methods	10.1016/j.mimet.2010.10.009	2010
	Plant growth promotion of the forage plant Lupinus albus Var. Orden Dorado using Pseudomonas agronomica sp. nov. and Bacillus pretiosus sp. nov. added over a valorized agricultural biowaste.	Robas Mora M, Fernandez Pastrana VM, Oliva LLG, Lobo AP, Jimenez Gomez PA.	Front Microbiol	10.3389/fmicb.2022.1046201	2022
Phylogeny	Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov.	Peix A, Valverde A, Rivas R, Igual JM, Ramirez-Bahena MH, Mateos PF, Santa-Regina I, Rodriguez-Barrueco C, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64621-0	2007

References

#2775	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6698
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38123	; Curators of the CIP;
#44248	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 712
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118246	Collection of Institut Pasteur ; Curators of the CIP; CIP 103295
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas chlororaphis subsp. aureofaciens (CCUG 712, CIP 103295, NCTC 10686)

Name and taxonomic classification