Pseudomonas moorei (DSM 12647, CCUG 53114, CIP 109622)

Name: Pseudomonas moorei (DSM 12647, CCUG 53114, CIP 109622)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13157

Type strain

Strain Designation RW10, RW 10

Culture col. no. DSM 12647 CCUG 53114 CIP 109622 RW10 RW 10

NCBI tax ID(s) 395599

Special Collections DSMZ CCUG CIP Literature strains

History <- R.-M. Wittich; RW10 CIP <- 2007, CCUG <- 2006, B. Camara and D.H. Pieper, HZI, Braunschweig, Germany: strain RW 10

Links

Pseudomonas moorei RW10 is an aerobe, Gram-negative bacterium that was isolated from soil samples.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 49333

DSM 12647,CCUG 53114,CIP 109622

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas moorei

Full scientific name Pseudomonas moorei Cámara et al. 2007

BacDive ID	Other strains from **Pseudomonas moorei** (1)	Type strain
13156	P. moorei RW10-F6, DSM 7390

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31953	negative
121135	negative	rod-shaped
125438			92.729
125438	negative		99
125439	negative		99.2

Pigmentation

31953

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4779	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
4779	MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)	Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water
37792	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121135	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
4779	positive	growth	30
37792	positive	growth	30
59804	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31953	aerobe
59804	aerobe
121135	obligate aerobe
125438	aerobe	94.145
125439	obligate aerobe	95.6

Spore formation

@ref	Spore formation	Confidence
31953
125439		99.4

Compound production

@ref	Compound
4779	muconat cycloisomerase II
4779	trans dienelactone hydrolase

Halophily

@ref	Salt	Growth	Tested relation	Concentration
31953	NaCl	positive	growth	<5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31953	18240 ChEBI	4-hydroxy-L-proline	+	carbon source
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
31953	16449 ChEBI	alanine	+	carbon source
31953	22599 ChEBI	arabinose	+	carbon source
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
31953	22653 ChEBI	asparagine	+	carbon source
31953	35391 ChEBI	aspartate	+	carbon source
31953	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
31953	17126 ChEBI	DL-carnitine	+	carbon source
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
31953	16000 ChEBI	ethanolamine	+	carbon source
31953	28260 ChEBI	galactose	+	carbon source
31953	24175 ChEBI	galacturonate	+	carbon source
31953	16865 ChEBI	gamma-aminobutyric acid	+	carbon source
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
31953	17234 ChEBI	glucose	+	carbon source
31953	29987 ChEBI	glutamate	+	carbon source
31953	17754 ChEBI	glycerol	+	carbon source
31953	27570 ChEBI	histidine	+	carbon source
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
31953	24996 ChEBI	lactate	+	carbon source
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
31953	29864 ChEBI	mannitol	+	carbon source
31953	51850 ChEBI	methyl pyruvate	+	carbon source
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
121135	17632 ChEBI	nitrate	-	reduction
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
121135	16301 ChEBI	nitrite	-	reduction
31953	26271 ChEBI	proline	+	carbon source
31953	17148 ChEBI	putrescine	+	carbon source
31953	26490 ChEBI	quinate	+	carbon source
31953	17822 ChEBI	serine	+	carbon source
31953	30031 ChEBI	succinate	+	carbon source
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
31953	27248 ChEBI	urocanic acid	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
121135	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121135	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
31953	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121135	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
121135	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121135	-	+	+	-	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
4779	-	-	-	+	-	-	-	-	+	+	+	+	-	-	+	+	-	+	+	+	+
4779	-	-	-	+	-	-	-	-	+	+	+	+	-	-	+	+	-	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
4779	soil samples		Hamburg	Germany	DEU	Europe
59804	Sediment,enrichment	1997	Hamburg,River Elbe	Germany	DEU	Europe
121135	Environment, Sediment, enrichment		Elbe river, Hamburg	Germany	DEU	Europe	1997

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4779	1	Risk group (German classification) According to TRBA 466
121135	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2639762638 annotated assembly for Pseudomonas moorei BS3775	contig	GCA_900102045	395599.12	2639762638	395599	75.69
66792	ASM880147v1 assembly for Pseudomonas moorei CCUG 53114	contig	GCA_008801475	395599.13		395599	63.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31953	Pseudomonas moorei partial 16S rRNA gene, type strain RW10T	AM293566	1459		395599

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas moorei CCUG 53114
NCBI: GCA_008801475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	89.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas moorei strain BS3775 strain DSM 12647
PATRIC: 395599.12

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	98.86	yes
125438	spore-forming	spore-formingⓘ	no	86.41	yes
125438	aerobic	aerobicⓘ	yes	94.15	yes
125438	thermophilic	thermophileⓘ	no	98.99	yes
125438	flagellated	motile2+ⓘ	yes	92.73	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In vitro study of the ecotoxicological risk of methylisothiazolinone and chloroxylenol towards soil bacteria.	Nowak-Lange M, Niedzialkowska K, Bernat P, Lisowska K.	Sci Rep	10.1038/s41598-022-22981-9	2022
Phylogeny	Identification and Differentiation of Pseudomonas Species in Field Samples Using an rpoD Amplicon Sequencing Methodology.	Lauritsen JG, Hansen ML, Bech PK, Jelsbak L, Gram L, Strube ML.	mSystems	10.1128/msystems.00704-21	2021
	Complete genome sequence of Pseudomonas moorei strain m318 isolated from rhizosphere of Pteris multifida in high-arsenic-content soil.	Han N, Yang C, Ho Y-N, Moriuchi R, Chen C-C, Inoue C, Chien M-F.	Microbiol Resour Announc	10.1128/mra.00774-24	2024
	Pseudomonas palmensis sp. nov., a Novel Bacterium Isolated From Nicotiana glauca Microbiome: Draft Genome Analysis and Biological Potential for Agriculture.	Gutierrez-Albanchez E, Garcia-Villaraco A, Lucas JA, Horche I, Ramos-Solano B, Gutierrez-Manero FJ.	Front Microbiol	10.3389/fmicb.2021.672751	2021
Phylogeny	Pseudomonas izuensis sp. nov., a novel species isolated from Izu Oshima, Japan.	Lu YJ, Morimoto Y, Tohya M, Hishinuma T, Hiramatsu K, Kirikae T, Baba T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004271	2020
Phylogeny	Pseudomonas reinekei sp. nov., Pseudomonas moorei sp. nov. and Pseudomonas mohnii sp. nov., novel species capable of degrading chlorosalicylates or isopimaric acid.	Camara B, Strompl C, Verbarg S, Sproer C, Pieper DH, Tindall BJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64703-0	2007

References

#4779	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12647
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28209	IJSEM 923 2007 ( DOI 10.1099/ijs.0.64703-0 , PubMed 17473234 )
#31953	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28209
#37792	; Curators of the CIP;
#59804	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53114
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#121135	Collection of Institut Pasteur ; Curators of the CIP; CIP 109622
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas moorei (DSM 12647, CCUG 53114, CIP 109622)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900102045

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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