Pseudomonas chlororaphis subsp. aurantiaca (DSM 19603, ATCC 33663, CIP 106718)

Name: Pseudomonas chlororaphis subsp. aurantiaca (DSM 19603, ATCC 33663, CIP 106718)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13159

Type strain

Culture col. no. DSM 19603 ATCC 33663 CIP 106718 LMG 21630 NCIMB 10068

NCBI tax ID(s) 86192

Special Collections DSMZ CIP

Links

Pseudomonas chlororaphis subsp. aurantiaca DSM 19603 is an obligate aerobe, mesophilic, Gram-negative prokaryote of the family Pseudomonadaceae.

Gram-negative motile rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 323069

ATCC 33663,NCIB 10068,CIP 106718,NCIMB 10068,VKM B-876,LMG 21630,ICMP 6003,BCRC 15821,CCRC 15821,CFBP 4369,DSM 19603

@ref 20215

Last LPSN update 2025-12-16 09:50:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas chlororaphis subsp. aurantiaca

Full scientific name Pseudomonas chlororaphis subsp. aurantiaca (Nakhimovskaya 1948) Peix et al. 2007

Synonyms (1)

Pseudomonas aurantiaca

BacDive ID	Other strains from **Pseudomonas chlororaphis subsp. aurantiaca** (2)	Type strain
141597	P. chlororaphis subsp. aurantiaca CCUG 3377 A
141598	P. chlororaphis subsp. aurantiaca CCUG 3377 B

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
118247	negative	rod-shaped
125439	negative		99.1
125438			91.841
125438	negative		98.5

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
37249	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
118247	CIP Medium 72	Medium recipe at CIP
8206	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8206	positive	growth	28	mesophilic
37249	positive	growth	25	mesophilic
118247	positive	growth	5-37
118247	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
118247	obligate aerobe
125438	aerobe	93.695

Spore formation

@ref	Spore formation	Confidence
125439		96.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
118247	NaCl	positive	growth	0-6 %
118247	NaCl		growth	8 %
118247	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
118247	16947 ChEBI	citrate	+	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
118247	4853 ChEBI	esculin	-	hydrolysis
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
118247	17632 ChEBI	nitrate	+	reduction
118247	17632 ChEBI	nitrate	-	respiration
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
118247	16301 ChEBI	nitrite	-	reduction
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
118247	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE
118247	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118247	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118247	amylase	-
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
118247	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118247	caseinase	+	3.4.21.50
118247	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
118247	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118247	gelatinase	+
68369	gelatinase	+		from API 20NE
118247	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
118247	lipase	+
68382	lipase (C 14)	+		from API zym
118247	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118247	ornithine decarboxylase	-	4.1.1.17
118247	oxidase	+
118247	protease	+
68382	trypsin	+	3.4.21.4	from API zym
118247	tryptophan deaminase	-
118247	tween esterase	+
118247	urease	+	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118247	-	+	+	+	+	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
8206	-	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	-	+	+	+	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118247	not determinedn.d.	+	+	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	+	-	-	+	-	-	+	+	+	+	+	+	-	-	+	-	-	-	+	+	+	+	+	+	+	-	+	+	+	-	-	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8206	1	Risk group (German classification) According to TRBA 466
118247	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM385183v1 assembly for Pseudomonas chlororaphis subsp. aurantiaca DSM 19603	complete	GCA_003851835	86192.21	2908486269	86192	95.35
66792	IMG-taxon 2636416019 annotated assembly for Pseudomonas chlororaphis LMG 21630	chromosome	GCA_900104985	587753.25	2636416019	587753	86.58

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8206	Pseudomonas chlororaphis subsp. aurantiaca gene for 16S rRNA, strain: ATCC 33663	AB021412	1504		86192

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas chlororaphis subsp. aurantiaca DSM 19603
NCBI: GCA_003851835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.70	no
125439	motility	BacteriaNetⓘ	yes	88.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	88.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas chlororaphis subsp. aurantiaca DSM 19603
NCBI: GCA_003851835.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.50	no
125438	anaerobic	anaerobicⓘ	no	98.34	yes
125438	aerobic	aerobicⓘ	yes	93.70	yes
125438	spore-forming	spore-formingⓘ	no	82.37	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	yes	91.84	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Total substitution and partial modification of the set of non-ribosomal peptide synthetases clusters lead to pyoverdine diversity in the Pseudomonas fluorescens complex.	Grana-Miraglia L, Geney Higuita JL, Salazar JC, Guaya Iniguez D, Alcolado Leon C, Garcia-Angulo VA.	Front Microbiol	10.3389/fmicb.2024.1421749	2024
	Recent Developments in the Biological Activities, Bioproduction, and Applications of Pseudomonas spp. Phenazines.	Serafim B, Bernardino AR, Freitas F, Torres CAV.	Molecules	10.3390/molecules28031368	2023
	Supercritical CO₂ Assisted Impregnation of Ibuprofen on Medium-Chain-Length Polyhydroxyalkanoates (mcl-PHA).	Meneses L, Craveiro R, Jesus AR, Reis MAM, Freitas F, Paiva A.	Molecules	10.3390/molecules26164772	2021
Genetics	Comprehensive genome analysis of Pseudomonas sp. SWRIQ11, a new plant growth-promoting bacterium that alleviates salinity stress in olive.	Zamanzadeh-Nasrabadi SM, Mohammadiapanah F, Sarikhan S, Shariati V, Saghafi K, Hosseini-Mazinani M.	3 Biotech	10.1007/s13205-023-03755-0	2023
	Isolation, characterization, and genetic manipulation of cold-tolerant, manganese-oxidizing Pseudomonas sp. strains.	Jones I, Vermillion D, Tracy C, Denton R, Davis R, Geszvain K.	Appl Environ Microbiol	10.1128/aem.00510-24	2024
	Recent Biotechnological Applications of Polyhydroxyalkanoates (PHA) in the Biomedical Sector-A Review.	Diniz MSDF, Mourao MM, Xavier LP, Santos AV.	Polymers (Basel)	10.3390/polym15224405	2023
	Modification of Glucose Metabolic Pathway to Enhance Polyhydroxyalkanoate Synthesis in Pseudomonas putida.	Dong Y, Zhai K, Li Y, Lv Z, Zhao M, Gan T, Ma Y.	Curr Issues Mol Biol	10.3390/cimb46110761	2024
	Screening of natural phenazine producers for electroactivity in bioelectrochemical systems.	Franco A, Elbahnasy M, Rosenbaum MA.	Microb Biotechnol	10.1111/1751-7915.14199	2023
	Exploiting Polyhydroxyalkanoates for Biomedical Applications.	Kalia VC, Patel SKS, Lee JK.	Polymers (Basel)	10.3390/polym15081937	2023
Metabolism	Genetic approach for the fast discovery of phenazine producing bacteria.	Schneemann I, Wiese J, Kunz AL, Imhoff JF.	Mar Drugs	10.3390/md9050772	2011
	Oxygen Plasma Treated-Electrospun Polyhydroxyalkanoate Scaffolds for Hydrophilicity Improvement and Cell Adhesion.	Esmail A, Pereira JR, Zoio P, Silvestre S, Menda UD, Sevrin C, Grandfils C, Fortunato E, Reis MAM, Henriques C, Oliva A, Freitas F.	Polymers (Basel)	10.3390/polym13071056	2021
	Reprocessing of side-streams towards obtaining valuable bacterial metabolites.	Piwowarek K, Lipinska E, Kieliszek M.	Appl Microbiol Biotechnol	10.1007/s00253-023-12458-8	2023
	In silico design and validation of a highly degenerate primer pair: a systematic approach.	Chukwuemeka PO, Umar HI, Olukunle OF, Oretade OM, Olowosoke CB, Akinsola EO, Elabiyi MO, Kurmi UG, Eigbe JO, Oyelere BR, Isunu LE, Oretade OJ.	J Genet Eng Biotechnol	10.1186/s43141-020-00086-y	2020
	Metabolite-mediated modelling of microbial community dynamics captures emergent behaviour more effectively than species-species modelling.	Brunner JD, Chia N.	J R Soc Interface	10.1098/rsif.2019.0423	2019
	Transient invaders can induce shifts between alternative stable states of microbial communities.	Amor DR, Ratzke C, Gore J.	Sci Adv	10.1126/sciadv.aay8676	2020
	Interspecies bacterial competition regulates community assembly in the C. elegans intestine.	Ortiz A, Vega NM, Ratzke C, Gore J.	ISME J	10.1038/s41396-021-00910-4	2021
Phylogeny	Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum.	Chi SI, Akuma M, Xu R, Plante V, Hadinezhad M, Tambong JT.	Sci Rep	10.1038/s41598-024-71418-y	2024
	Genome Sequence of Pseudomonas chlororaphis Lzh-T5, a Plant Growth-Promoting Rhizobacterium with Antimicrobial Activity.	Li Z, Li X, Zeng Q, Chen M, Liu D, Wang J, Shen L, Song F.	Genome Announc	10.1128/genomea.00328-18	2018
Biotechnology	Enhanced co-production of medium-chain-length polyhydroxyalkanoates and phenazines from crude glycerol by high cell density cultivation of Pseudomonas chlororaphis in membrane bioreactor.	Aloui H, Khomlaem C, Torres CAV, Freitas F, Reis MAM, Kim BS	Int J Biol Macromol	10.1016/j.ijbiomac.2022.05.089	2022
Enzymology	Production of medium-chain-length polyhydroxyalkanoates by Pseudomonas chlororaphis subsp. aurantiaca: Cultivation on fruit pulp waste and polymer characterization.	Pereira JR, Araujo D, Freitas P, Marques AC, Alves VD, Sevrin C, Grandfils C, Fortunato E, Reis MAM, Freitas F	Int J Biol Macromol	10.1016/j.ijbiomac.2020.11.162	2020
Metabolism	Control of pyrimidine nucleotide formation in Pseudomonas aurantiaca.	Domakonda A, West TP	Arch Microbiol	10.1007/s00203-020-01842-x	2020
Metabolism	Pseudomonas chlororaphis as a multiproduct platform: Conversion of glycerol into high-value biopolymers and phenazines.	de Meneses L, Pereira JR, Sevrin C, Grandfils C, Paiva A, Reis MAM, Freitas F	N Biotechnol	10.1016/j.nbt.2019.10.002	2019
Pathogenicity	Demonstration of the adhesive properties of the medium-chain-length polyhydroxyalkanoate produced by Pseudomonas chlororaphis subsp. aurantiaca from glycerol.	Pereira JR, Araujo D, Marques AC, Neves LA, Grandfils C, Sevrin C, Alves VD, Fortunato E, Reis MAM, Freitas F	Int J Biol Macromol	10.1016/j.ijbiomac.2018.09.064	2018
Phylogeny	Luteibacter rhizovicinus MIMR1 promotes root development in barley (Hordeum vulgare L.) under laboratory conditions.	Guglielmetti S, Basilico R, Taverniti V, Arioli S, Piagnani C, Bernacchi A	World J Microbiol Biotechnol	10.1007/s11274-013-1365-6	2013
	Plant growth promotion of the forage plant Lupinus albus Var. Orden Dorado using Pseudomonas agronomica sp. nov. and Bacillus pretiosus sp. nov. added over a valorized agricultural biowaste.	Robas Mora M, Fernandez Pastrana VM, Oliva LLG, Lobo AP, Jimenez Gomez PA.	Front Microbiol	10.3389/fmicb.2022.1046201	2022
Phylogeny	Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov.	Peix A, Valverde A, Rivas R, Igual JM, Ramirez-Bahena MH, Mateos PF, Santa-Regina I, Rodriguez-Barrueco C, Martinez-Molina E, Velazquez E	Int J Syst Evol Microbiol	10.1099/ijs.0.64621-0	2007

References

#8206	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19603
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37249	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#118247	Collection of Institut Pasteur ; Curators of the CIP; CIP 106718
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas chlororaphis subsp. aurantiaca (DSM 19603, ATCC 33663, CIP 106718)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003851835

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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