Name: Pseudomonas chlororaphis subsp. aureofaciens DSM 50082
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 12813

Type strain:

Species: Pseudomonas chlororaphis subsp. aureofaciens

Culture col. no.: DSM 50082, ATCC 13986, ICPB 2393, NRRL B-1543 P, CCUG 29517, JCM 20003, IAM 1001, NCIMB 9265, NRRL B-1543

Strain history: IAM 1001 <-- T. Asai KS 0004 <-- NRRL B-1543.

NCBI tax ID(s): 587851 (subspecies)

SI-ID 35945

ATCC 13986, NRRL B-1543, CCUG 29517, DSM 50082, NCIMB 9265, IAM1001, IFO3523, NCIB 9265, LMD 54.12, NCCB 54012, NBRC 3523, BCRC 11014, CCRC 11014, KCTC 12297, CGMCC 1.2785, JCM 20003

Special Collections

Other strains from Pseudomonas chlororaphis subsp. aureofaciens

Section

Pseudomonas chlororaphis subsp. aureofaciens DSM 50082 is an aerobe bacterium that was isolated from silt loam.

aerobe
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas chlororaphis subsp. aureofaciens**
	Full Scientific Name (LPSN)	Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007

Synonym

Pseudomonas aureofaciens

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12632]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #12632]

Culture medium growth

[Ref.: #12632]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12632]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12632]	growth	28 °C
[Ref.: #49642]	growth	28-37 °C
[Ref.: #67770]	growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49642]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE, API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #49642]

Fatty acid	Percentage	ECL
C16:0	31.4	16
C16:1 ω7c	25.2	15.819
C17:0 CYCLO	12.7	16.888
C18:1 ω7c /12t/9t	10.7	17.824
C12:0 2OH	5.3	13.178
C10:0 3OH	4.6	11.423
C12:0 3OH	3.6	13.455
C12:0	2.6	12
C14:0	0.6	14
C18:1 ω9c	0.6	17.769
C18:2 ω6,9c/C18:0 ANTE	0.6	17.724
C15:0	0.5	15
C19:0 CYCLO ω8c	0.5	18.9
C18:0	0.4	18
C17:0	0.4	17
C17:1 ω8c	0.2	16.792

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #49642]	7542	-	-	-	+	-	-	-	-	+	+	+	+	+	-	+	+	-	+	+	+	+
[Ref.: #12632]	22928	-	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	-	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #49642]	3835	-	+	+	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12632]	Sample type/isolated from	silt loam
[Ref.: #12632]	Geographic location (country and/or sea, region)	Miami
[Ref.: #12632]	Country	USA
[Ref.: #12632]	Country ISO 3 Code	USA
[Ref.: #12632]	Continent	North America

[Ref.: #49642]	Sample type/isolated from	Silt loam
[Ref.: #49642]	Geographic location (country and/or sea, region)	Springfield,OH
[Ref.: #49642]	Country	USA
[Ref.: #49642]	Country ISO 3 Code	USA
[Ref.: #49642]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12632]

Biosafety level

Risk group (German classification)
According to TRBA 466

Availability in culture collections External links

[Ref.: #12632]

Culture collection no.

DSM 50082, ATCC 13986, ICPB 2393, NRRL B-1543 P, CCUG 29517, JCM 20003, IAM 1001, NCIMB 9265, NRRL B-1543

[Ref.: #82023]

SI-ID 35945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Arogenate (pretyrosine) pathway of tyrosine and phenylalanine biosynthesis in Pseudomonas aureofaciens ATCC 15926.	Keller B, Keller E, Salcher O, Lingens F	J Gen Microbiol	10.1099/00221287-128-6-1199	1982	*

References

#12632

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50082

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#49642 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 29517
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#82023

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID35945.1 )

* These data were automatically processed and therefore are not curated

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