Pseudomonas chlororaphis subsp. aureofaciens (DSM 50139, ATCC 17415, ICPB 2717-36)

Name: Pseudomonas chlororaphis subsp. aureofaciens (DSM 50139, ATCC 17415, ICPB 2717-36)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 12816

Type strain

Culture col. no. DSM 50139 ATCC 17415 ICPB 2717-36 NRRL B-1482 R

NCBI tax ID(s) 587851

Special Collections DSMZ

History <- ICPB <- NRRL

Links

Pseudomonas chlororaphis subsp. aureofaciens DSM 50139 is a bacterium that was isolated from farm soil.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 3936

LMG 5832,ATCC 17415,DSM 50139,IFO 3522,NCPPB 1800,NBRC 3522,ICMP 13611,KCTC 12350,CFBP 3155

@ref 20215

Last LPSN update 2026-02-09 11:20:57

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas chlororaphis subsp. aureofaciens

Full scientific name Pseudomonas chlororaphis subsp. aureofaciens (Kluyver 1956) Peix et al. 2007

Synonyms (1)

Pseudomonas aureofaciens

BacDive ID	Other strains from **Pseudomonas chlororaphis subsp. aureofaciens** (7)	Type strain
13158	P. chlororaphis subsp. aureofaciens EIII.9.25.1, L8, CCUG 712, CIP 103295, NCTC ... (type strain)
12811	P. chlororaphis subsp. aureofaciens 305-STR-1-4, DSM 6508
12812	P. chlororaphis subsp. aureofaciens RW71, DSM 11437, DSM 12972
12813	P. chlororaphis subsp. aureofaciens DSM 50082, ATCC 13986, ICPB 2393, NRRL B-1543 ...
12814	P. chlororaphis subsp. aureofaciens DSM 50135, ATCC 17810, ICPB 2941-389, NRRL ...
12815	P. chlororaphis subsp. aureofaciens DSM 50136, ATCC 17811, ICPB 2942-390, NRRL ...
131887	P. chlororaphis subsp. aureofaciens PT02, DSM 29578

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.5
125438		93.085
125438	negative	99

Multimedia

@ref:	12642
multimedia content:	DSM_50139.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_50139.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12642	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
12642	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	95.232
125439	obligate aerobe	92.9

Spore formation

@ref	Spore formation	Confidence
125439		97.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
12642	-	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	-	+	+	+	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Engineered	#Food production	#Aquaculture

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12642	farm soil	Peoria	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12642	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM385114v1 assembly for Pseudomonas chlororaphis ATCC 17415	complete	GCA_003851145	587753.60	2877820159	587753	95.87

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pseudomonas chlororaphis strain ATCC 17415
PATRIC: 587753.60

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.30	no
125439	motility	BacteriaNetⓘ	yes	87.40	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas chlororaphis ATCC 17415
NCBI: GCA_003851145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	99.30	no
125438	aerobic	aerobicⓘ	yes	95.23	no
125438	spore-forming	spore-formingⓘ	no	85.12	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	93.09	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenazines are involved in the antagonism of a novel subspecies of Pseudomonas chlororaphis strain S1Bt23 against Pythium ultimum.	Chi SI, Akuma M, Xu R, Plante V, Hadinezhad M, Tambong JT.	Sci Rep	10.1038/s41598-024-71418-y	2024
	A-to-I mRNA editing recodes hundreds of genes in dozens of species and produces endogenous protein isoforms in bacteria.	Elias E, Gifford I, Didi L, Fargeon O, Arad D, Cohen-Pavon R, Sorek G, Levin L, Melamed D, Aspit L, Barrick JE, Bar-Yaacov D.	Nucleic Acids Res	10.1093/nar/gkaf656	2025
Metabolism	Metabolic and Genomic Traits of Phytobeneficial Phenazine-Producing Pseudomonas spp. Are Linked to Rhizosphere Colonization in Arabidopsis thaliana and Solanum tuberosum.	Zboralski A, Biessy A, Savoie MC, Novinscak A, Filion M.	Appl Environ Microbiol	10.1128/aem.02443-19	2020
	Implications of carbon catabolite repression for plant-microbe interactions.	Franzino T, Boubakri H, Cernava T, Abrouk D, Achouak W, Reverchon S, Nasser W, Haichar FEZ.	Plant Commun	10.1016/j.xplc.2021.100272	2022
Metabolism	Diversity and evolution of the phenazine biosynthesis pathway.	Mavrodi DV, Peever TL, Mavrodi OV, Parejko JA, Raaijmakers JM, Lemanceau P, Mazurier S, Heide L, Blankenfeldt W, Weller DM, Thomashow LS.	Appl Environ Microbiol	10.1128/aem.02009-09	2010
Metabolism	Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1.	Mavrodi DV, Bonsall RF, Delaney SM, Soule MJ, Phillips G, Thomashow LS.	J Bacteriol	10.1128/jb.183.21.6454-6465.2001	2001

References

#12642	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 50139
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas chlororaphis subsp. aureofaciens (DSM 50139, ATCC 17415, ICPB 2717-36)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003851145

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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