Name: Fructilactobacillus fructivorans H42
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6474

Type strain:

Species: Fructilactobacillus fructivorans

Strain Designation: H42

Culture col. no.: CCUG 32247, LMG 9478, IAM H42, CIP 103141, LMG 11720, DSM 20571, ATCC 15434, JCM 1199, BCRC 12938, CECT 4136, IFO 15887, JCM 7793, KCTC 3534, NBRC 15887, NCFB 2719, NCIMB 702719, NRIC 0974, NCDO 2719

Strain history: CIP <- 1988, DSMZ, Lactobacillus homohiochii <- ATCC <- K. Kitahara: strain H42 <- T. Kaneko

NCBI tax ID(s): 1614 (species)

SI-ID 92310

LMG 11720, ATCC 15434, CCRC 12938, CIP 103141, JCM 1199, LMG 18451, LMG 18930, LMG 9478, NCFB 2719, CCUG 32247, NCDO 2719, JCM 7793, IFO 15887, NCIMB 702719, CECT 4136, KCTC 3534, NBRC 15887, BCRC 12938, KCTC 3963, NRRL B-4559, DSM 20571

Special Collections

Other strains from Fructilactobacillus fructivorans

Section

Fructilactobacillus fructivorans H42 is an anaerobe bacterium that was isolated from spoilt sake.

anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Fructilactobacillus*
	Species	**Fructilactobacillus fructivorans**
	Full Scientific Name (LPSN)	Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020

	Synonym	Lactobacillus trichodes
	Synonym	Lactobacillus heterohiochii
	Synonym	Lactobacillus homohiochii
	Synonym	Lactobacillus fructivorans

Information on morphological and physiological properties Morphology

[Ref.: #119470]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.51

[Ref.: #119470]	Cell shape	rod-shaped

[Ref.: #119470]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8921]

Culture medium

LACTOBACILLUS MEDIUM II (DSMZ Medium 93)

[Ref.: #8921]

Culture medium growth

[Ref.: #8921]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8921]

Culture medium composition

expand / minimize

[Ref.: #42101]

Culture medium

MEDIUM 46 - for Lactobacillus homohiochii

[Ref.: #42101]

Culture medium growth

[Ref.: #42101]

Culture medium composition

expand / minimize

[Ref.: #119470]

Culture medium

CIP Medium 72

[Ref.: #119470]

Culture medium growth

[Ref.: #119470]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8921]	growth	28 °C
[Ref.: #42101]	growth	25 °C
[Ref.: #50928]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50928]	Oxygen tolerance	anaerobe
[Ref.: #50928]	Oxygen tolerance	microaerophile
[Ref.: #119470]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #8921]	Murein short key	A11.31
[Ref.: #8921]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #67770]

Observation

Assay of Mevalonic acid

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #119470]	nitrate ChEBI	-	reduction
[Ref.: #119470]	nitrate ChEBI	+	respiration
[Ref.: #119470]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119470]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119470]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119470]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #119470]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119470]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #8921]	14704	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119470]	7388	-	+	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8921]	Sample type/isolated from	spoilt sake

[Ref.: #50928]	Sample type/isolated from	Sake,spoiled

[Ref.: #67770]	Sample type/isolated from	Spoiled sake

[Ref.: #119470]	Sample type/isolated from	Food, Spoiled sake
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Environmental	#Microbial community	-
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC311740 (>99% sequence identity) for Fructilactobacillus fructivorans subclade from Microbeatlas

Aquatic Samples	96
Soil Samples	41
Animal Samples	438
Plant Samples	64
Total Samples	639

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8921]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119470]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus homohiochii gene for 16S ribosomal RNA, partial sequence, strain: JCM 1199	LC311739	1506	GenBank ENA	1614 tax ID
[Ref.: #67770]	Lactobacillus homohiochii gene for 16S ribosomal RNA, partial sequence, strain: JCM 7793	LC311740	1506	GenBank ENA	1614 tax ID
[Ref.: #20218]	Lactobacillus homohiochii ATCC 15434 16S ribosomal RNA gene, partial sequence	AF429511	503	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Lactobacillus homohiochii strain ATCC 15434 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF429598	537	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Lactobacillus homohiochii partial 16S rRNA gene, strain type strain:DSM 20571	AM113780	1537	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Fructilactobacillus fructivorans JCM 1199 gene for 16S rRNA, partial sequence	AB289159	639	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Fructilactobacillus fructivorans gene for 16S ribosomal RNA, partial sequence	D31694	206	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Fructilactobacillus fructivorans JCM 7793 gene for 16S rRNA, partial sequence	AB289161	645	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Lactobacillus homohiochii partial 16S rRNA gene, strain LMG 9478T	AJ621552	1473	GenBank ENA	33961 tax ID	*
[Ref.: #20218]	Fructilactobacillus fructivorans NBRC 15887 gene for 16S rRNA, partial sequence	AB680990	1500	GenBank ENA	33961 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructilactobacillus fructivorans DSM 20571	GCA_001436985	scaffold	GenBank ENA	1614 tax ID
[Ref.: #66792]	Lactobacillus homohiochii strain DSM 20571	33961.3	wgs	PATRIC	1614 tax ID	*
[Ref.: #66792]	Lactobacillus homohiochii DSM 20571	2657245150	draft	JGI IMG/M	33961 tax ID	*

[Ref.: #8921]	GC-content	38.0 mol%
[Ref.: #67770]	GC-content	35.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fructilactobacillus fructivorans DSM 20571 NCBI: GCA_001436985.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus homohiochii strain DSM 20571 PATRIC: 33961.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.51	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	76.951	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.777	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.05	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.267	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.5	no

Availability in culture collections External links

[Ref.: #8921]

Culture collection no.

CCUG 32247, LMG 9478, IAM H42, CIP 103141, LMG 11720, DSM 20571, ATCC 15434, JCM 1199, BCRC 12938, CECT 4136, IFO 15887, JCM 7793, KCTC 3534, NBRC 15887, NCFB 2719, NCIMB 702719, NRIC 0974, NCDO 2719

[Ref.: #75947]

SI-ID 92310

References

#8921

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20571

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#42101 ; Curators of the CIP;
#50928 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32247

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75947

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID92310.1 )

#119470 Collection of Institut Pasteur ; Curators of the CIP; CIP 103141
* These data were automatically processed and therefore are not curated

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Fructilactobacillus fructivorans DSM 20571

Lactobacillus homohiochii strain DSM 20571

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