Dietzia maris AUCNM-A-593 is an aerobe, chemoorganotroph, mesophilic prokaryote that forms circular colonies and was isolated from soil.
coccus-shaped colony-forming aerobe chemoorganotroph mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Mycobacteriales |
| Family Dietziaceae |
| Genus Dietzia |
| Species Dietzia maris |
| Full scientific name Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995 |
| Synonyms (2) |
| @ref: | 11235 |
| multimedia content: | DSM_43672-1.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43672-1.jpg |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref: | 11235 |
| multimedia content: | DSM_43672.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_43672.jpg |
| caption: | Medium 215 28°C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11235 | BHI MEDIUM (DSMZ Medium 215) | Medium recipe at MediaDive | Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water | ||
| 11235 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 41038 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 120822 | CIP Medium 3 | Medium recipe at CIP |
| 23231 | Typechemoorganotroph |
| 23231 | Spore formationno |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120822 | NaCl | positive | growth | 0-10 % |
| 67770 | Observationquinones: MK-8(H2) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 120822 | 16947 ChEBI | citrate | - | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 120822 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 120822 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 120822 | 17632 ChEBI | nitrate | + | reduction | |
| 120822 | 17632 ChEBI | nitrate | - | respiration | |
| 120822 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120822 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120822 | amylase | + | ||
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120822 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120822 | caseinase | - | 3.4.21.50 | |
| 23231 | catalase | + | 1.11.1.6 | |
| 120822 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 120822 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120822 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120822 | gelatinase | - | ||
| 120822 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120822 | lipase | - | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 120822 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120822 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120822 | oxidase | - | ||
| 120822 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 120822 | protease | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120822 | tryptophan deaminase | - | ||
| 120822 | tween esterase | + | ||
| 120822 | urease | + | 3.5.1.5 | |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120822 | not determinedn.d. | +/- | - | - | - | - | - | - | - | - | - | +/- | +/- | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Terrestrial | #Soil | |
| #Host | #Fishes | - | |
| #Host Body-Site | #Gastrointestinal tract | - | |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
Global distribution of 16S sequence X81920 (>99% sequence identity) for Dietzia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | scaffolds assembly for Dietzia maris DSM 43672 | contig | 37915 | 39.87 | ||||
| 124043 | ASM980636v1 assembly for Dietzia maris IMV 195 | scaffold | 37915 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | D.maris 16S rRNA gene (ATCC 35013T) | X81920 | 1316 | 37915 | ||
| 20218 | Dietzia maris strain DSM 43672 16S ribosomal RNA gene, partial sequence | FJ468333 | 1439 | 37915 | ||
| 20218 | Dietzia maris strain DSM 43672 16S ribosomal RNA gene, partial sequence | KF410336 | 1365 | 37915 | ||
| 20218 | D.maris (DSM 43672) 16S rRNA gene | X79290 | 1475 | 37915 | ||
| 124043 | Dietzia maris strain DSM 43672(T) 16S ribosomal RNA gene, partial sequence. | MN686677 | 525 | 37915 | ||
| 124043 | Dietzia maris strain DSM 43672 16S ribosomal RNA gene, partial sequence. | PQ248421 | 802 | 37915 | ||
| 124043 | Dietzia maris strain DSM 43672(T) 16S ribosomal RNA gene, partial sequence. | MN686624 | 546 | 37915 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 71.10 | no |
| 125439 | motility | BacteriaNetⓘ | no | 74.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 96.50 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 79.90 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 91.05 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 96.33 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 66.97 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 87.39 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 95.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 90.60 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Plant Growth-Promoting Attributes of Zinc Solubilizing Dietzia maris Isolated from Polyhouse Rhizospheric Soil of Punjab. | Rani N, Kaur G, Kaur S, Mutreja V, Pandey N. | Curr Microbiol | 10.1007/s00284-022-03147-2 | 2022 | ||
| Phylogeny | An observational field study of the cloacal microbiota in adult laying hens with and without access to an outdoor range. | Schreuder J, Velkers FC, Bouwstra RJ, Beerens N, Stegeman JA, de Boer WF, van Hooft P, Elbers ARW, Bossers A, Jurburg SD. | Anim Microbiome | 10.1186/s42523-020-00044-6 | 2020 | |
| Microbial community succession during crude oil-degrading bacterial enrichment cultivation and construction of a degrading consortium. | Yu T, Liu X, Ai J, Wang J, Guo Y, Liu X, He X, Deng Z, Jiang Y. | Front Microbiol | 10.3389/fmicb.2022.1044448 | 2022 | ||
| Phylogeny | Identification of atypical Rhodococcus-like clinical isolates as Dietzia spp. by 16S rRNA gene sequencing. | Pilares L, Aguero J, Vazquez-Boland JA, Martinez-Martinez L, Navas J. | J Clin Microbiol | 10.1128/jcm.01730-09 | 2010 | |
| Metabolism | Dynamics of bacterial populations during bench-scale bioremediation of oily seawater and desert soil bioaugmented with coastal microbial mats. | Ali N, Dashti N, Salamah S, Sorkhoh N, Al-Awadhi H, Radwan S. | Microb Biotechnol | 10.1111/1751-7915.12326 | 2016 | |
| Unravelling the genetic and functional diversity of dominant bacterial communities involved in manure co-composting bioremediation of complex crude oil waste sludge. | Ubani O, Atagana HI, Selvarajan R, Ogola HJ. | Heliyon | 10.1016/j.heliyon.2022.e08945 | 2022 | ||
| Phylogeny | Molecular identification of a Dietzia maris hip prosthesis infection isolate. | Pidoux O, Argenson JN, Jacomo V, Drancourt M. | J Clin Microbiol | 10.1128/jcm.39.7.2634-2636.2001 | 2001 | |
| Enzymology | Fluorescence in situ hybridization using peptide nucleic acid probes for rapid detection of Mycobacterium avium subsp. avium and Mycobacterium avium subsp. paratuberculosis in potable-water biofilms. | Lehtola MJ, Torvinen E, Miettinen IT, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.72.1.848-853.2006 | 2006 | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Phylogeny | A PCR-based intergenic spacer region-capillary gel electrophoresis typing method for identification and subtyping of Nocardia species. | Wehrhahn MC, Xiao M, Kong F, Xu YC, Chen SC. | J Clin Microbiol | 10.1128/jcm.01311-12 | 2012 | |
| Enzymology | Group-specific small-subunit rRNA hybridization probes to characterize filamentous foaming in activated sludge systems. | de los Reyes FL, Ritter W, Raskin L. | Appl Environ Microbiol | 10.1128/aem.63.3.1107-1117.1997 | 1997 | |
| Pathogenicity | Pathogenic Nocardia, Rhodococcus, and related organisms are highly susceptible to imidazole antifungals. | Dabbs ER, Naidoo S, Lephoto C, Nikitina N. | Antimicrob Agents Chemother | 10.1128/aac.47.4.1476-1478.2003 | 2003 | |
| Phylogeny | Distribution and phylogenetic analysis of family 19 chitinases in Actinobacteria. | Kawase T, Saito A, Sato T, Kanai R, Fujii T, Nikaidou N, Miyashita K, Watanabe T. | Appl Environ Microbiol | 10.1128/aem.70.2.1135-1144.2004 | 2004 | |
| Metabolism | Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. | Leys NM, Ryngaert A, Bastiaens L, Verstraete W, Top EM, Springael D. | Appl Environ Microbiol | 10.1128/aem.70.4.1944-1955.2004 | 2004 | |
| Proteome | Detection and accurate identification of Mycobacterium species by flow injection tandem mass spectrometry (FIA-MS/MS) analysis of mycolic acids. | Rafal S, Magdalena D, Karol M, Bartlomiej S, Konrad K. | Sci Rep | 10.1038/s41598-025-96867-x | 2025 | |
| Metabolism | Degradation of carbonyl sulfide by Actinomycetes and detection of clade D of beta-class carbonic anhydrase. | Ogawa T, Kato H, Higashide M, Nishimiya M, Katayama Y | FEMS Microbiol Lett | 10.1093/femsle/fnw223 | 2016 | |
| Genetics | Draft Genome Sequence of Dietzia maris DSM 43672, a Gram-Positive Bacterium of the Mycolata Group. | Ganguly S, Jimenez-Galisteo G, Pletzer D, Winterhalter M, Benz R, Vinas M | Genome Announc | 10.1128/genomeA.00542-16 | 2016 | |
| Metabolism | Discovery of a cell wall porin in the mycolic-acid-containing actinomycete Dietzia maris DSM 43672. | Mafakheri S, Barcena-Uribarri I, Abdali N, Jones AL, Sutcliffe IC, Benz R | FEBS J | 10.1111/febs.12758 | 2014 | |
| Phylogeny | [Free mycolic acids of the cells of coryneform and Nocardia-like bacteria]. | Koronelli TV, Rozynov BV, Kvasnikov EI, Nogina TM, Nesterenko OA | Mikrobiologiia | 1984 | ||
| Phylogeny | Dietzia schimae sp. nov. and Dietzia cercidiphylli sp. nov., from surface-sterilized plant tissues. | Li J, Zhao GZ, Zhang YQ, Klenk HP, Pukall R, Qin S, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.2008/000919-0 | 2008 |
| #11235 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43672 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #23231 | F. A. RAINEY, S. KLATTE, R. M. KROPPENSTEDT, E. STACKEBRANDT: Dietzia, New Genus Including Dietzia maris comb. nov., Formerly Rhodococcus maris. IJSEM 45: 32 - 36 1995 ( DOI 10.1099/00207713-45-1-32 , PubMed 7857805 ) |
| #41038 | ; Curators of the CIP; |
| #56338 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 44488 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120822 | Collection of Institut Pasteur ; Curators of the CIP; CIP 104188 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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