Dietzia maris (DSM 44904, CCUG 50875, CIP 50875)

Name: Dietzia maris (DSM 44904, CCUG 50875, CIP 50875)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4255

Type strain

Culture col. no. DSM 44904 CCUG 50875 CIP 50875 IMMIB RIV-399 NBRC 102147 2 more

NCBI tax ID(s) 321318

Special Collections DSMZ CCUG JCM CIP Wink compendium Literature strains

History <- A. F. Yassin IFM 10668 <-- DSM 44904 <-- A. F. Yassin IMMIB RIV-399.

Links

Dietzia maris DSM 44904 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from perianal swab of a patient with bonmarrow transplantation.

spore-forming Gram-positive rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 215521

DSM 44904,CCUG 50875,JCM 13663,NBRC 102147,CIP 50875

@ref 20215

Last LPSN update 2026-02-09 11:18:41

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Dietziaceae

Genus Dietzia

Species Dietzia maris

Full scientific name Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995

Synonyms (2)

Rhodococcus maris
Dietzia cinnamea

BacDive ID	Other strains from **Dietzia maris** (16)	Type strain
4241	D. maris AUCNM-A-593, DSM 43672, ATCC 35013, AUCNM ... (type strain)
4242	D. maris DSM 43984
4243	D. maris 692-76, GH 1649, DSM 44472, CIP 104289, CCUG ...
4244	D. maris GH 1655, DSM 44474
4245	D. maris 32D, DSM 44747
4246	D. maris DSM 46102, IFO 15802, IMET 7759, NBRC 15802, ...
4247	D. maris KS_PS39, DSM 30840
4249	D. maris 45, 889-82, GH 1650, DSM 44473, CIP 104293, ...
4256	D. maris P4, DSM 44994, CIP 109208
4257	D. maris E6, DSM 30860
135029	D. maris CIP 104507, IMV 294, JCM 6168, VKM Ac-980
150912	D. maris CCUG 42712
154232	D. maris CCUG 52856 A
154688	D. maris CCUG 54856
165354	D. maris JCM 6167, CIP 104506, IMV 283, VKM Ac-959
165355	D. maris JCM 6169, IMV 392, VKM Ac-983

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
31593	positive	rod-shaped
125438			90.6
125438	positive		91.096
125439	positive		99.3

Colony morphology

@ref	Colony color	Incubation period	Medium used
19885	Deep orange	10-14 days	ISP 2
19885	Deep orange	10-14 days	ISP 3
19885	Yellow orange	10-14 days	ISP 4
19885	Yellow orange	10-14 days	ISP 5
19885	Yellow orange	10-14 days	ISP 6
19885	Yellow orange	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19885		ISP 2
19885		ISP 3
19885		ISP 4
19885		ISP 5
19885		ISP 6
19885		ISP 7

Pigmentation

31593

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12188	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
12188	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
19885	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19885	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19885	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19885	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19885	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19885	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes

Culture temp

@ref	Growth	Type	Temperature (°C)
12188	positive	growth	28
19885	positive	optimum	28
31593	positive	growth	22-45
31593	positive	optimum	35-45
59035	positive	growth	37
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
31593	positive	optimum	7
31593	positive	growth	7

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
31593	aerobe
59035	aerobe
125439	obligate aerobe	91.3

Spore formation

31593

Spore formationyes

Observation

@ref	Observation
31593	aggregates in chains
67770	quinones: MK-8(H₂), MK-7(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31593	30089 ChEBI	acetate	+	carbon source
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
31593	17234 ChEBI	glucose	+	carbon source
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
31593	17306 ChEBI	maltose	+	carbon source
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
31593	catalase	+	1.11.1.6
68379	gelatinase	-		from API Coryne
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
19885	-	-	+	+	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.
12188	+	-	+/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19885	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-
12188	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	-
#Infection	#Patient	#Swab
#Host Body-Site	#Gastrointestinal tract	-

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent
12188	perianal swab of a patient with bonmarrow transplantation		Germany	DEU	Europe
59035	Human perianal,bone-marrow transplantation	1995	Germany	DEU	Europe
67770	Perianal swab of a human with a bone marrow transplant

Taxonmaps

69479

Global distribution of 16S sequence FJ468339 (>99% sequence identity) for Dietzia from Microbeatlas

Aquatic Samples	9470
Soil Samples	4780
Animal Samples	31750
Plant Samples	1853
Total Samples	47853

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
12188	yes, in single cases	1	Risk group (German classification) According to TRBA 466
19885		2	Risk group According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM157106v1 assembly for Dietzia cinnamea NBRC 102147	contig	GCA_001571065	1223524.3	2675903565	1223524	44.84

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Dietzia cinnamea strain DSM 44904 16S ribosomal RNA gene, partial sequence	FJ468339	1442	321318
12188	Dietzia cinnamea partial 16S rRNA gene, type strain IMMIB RIV-399T	AJ920289	1486	321318
124043	Dietzia cinnamea strain IMMIB RIV-399(T) 16S ribosomal RNA gene, partial sequence.	MH298652	702	321318

GC content

@ref	GC-content (mol%)	Method
12188	72.3
67770	70.8	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dietzia cinnamea NBRC 102147
NCBI: GCA_001571065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	59.90	no
125439	motility	BacteriaNetⓘ	no	83.90	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dietzia cinnamea NBRC 102147
PATRIC: 1223524.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.10	yes
125438	anaerobic	anaerobicⓘ	no	96.63	no
125438	spore-forming	spore-formingⓘ	no	62.22	yes
125438	aerobic	aerobicⓘ	yes	87.49	yes
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	90.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	First isolation of Dietzia cinnamea from a dog bite wound in an adult patient.	Hirvonen JJ, Lepisto I, Mero S, Kaukoranta SS.	J Clin Microbiol	10.1128/jcm.01939-12	2012
	Identification of Dietzia spp. from Cardiac Tissue by 16S rRNA PCR in a Patient with Culture-Negative Device-Associated Endocarditis: A Case Report and Review of the Literature.	Sudhindra P, Wang G, Nadelman RB.	Case Rep Infect Dis	10.1155/2016/8935052	2016
Phylogeny	Comparison of the Vitek MS and Bruker Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry Systems for Identification of Rhodococcus equi and Dietzia spp.	de Alegria Puig CR, Pilares L, Marco F, Vila J, Martinez-Martinez L, Navas J.	J Clin Microbiol	10.1128/jcm.00377-17	2017
	Genetic manipulation tools for Dietzia spp.	Szvetnik A, Bihari Z, Szabo Z, Kelemen O, Kiss I.	J Appl Microbiol	10.1111/j.1365-2672.2010.04818.x	2010
	Bacterial crude oil and polyaromatic hydrocarbon degraders from Kazakh oil fields as barley growth support.	Yessentayeva K, Reinhard A, Berzhanova R, Mukasheva T, Urich T, Mikolasch A.	Appl Microbiol Biotechnol	10.1007/s00253-024-13010-y	2024
	Dietzia species pacemaker pocket infection: an unusual organism in human infections.	Perkin S, Wilson A, Walker D, McWilliams E.	BMJ Case Rep	10.1136/bcr.10.2011.5011	2012
Genetics	Genome-Based Taxonomic Classification of the Phylum Actinobacteria.	Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M.	Front Microbiol	10.3389/fmicb.2018.02007	2018
Phylogeny	Dietzia kunjamensis sp. nov., isolated from the Indian Himalayas.	Mayilraj S, Suresh K, Kroppenstedt RM, Saini HS.	Int J Syst Evol Microbiol	10.1099/ijs.0.64212-0	2006
Phylogeny	Dietzia cinnamea sp. nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant.	Yassin AF, Hupfer H, Schaal KP	Int J Syst Evol Microbiol	10.1099/ijs.0.63863-0	2006

References

#12188	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44904
#19885	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#27882	IJSEM 641 2006 ( DOI 10.1099/ijs.0.63863-0 , PubMed 16514042 )
#31593	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27882
#59035	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50875
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Dietzia maris (DSM 44904, CCUG 50875, CIP 50875)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001571065

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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