Name: Dietzia maris DSM 44904
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 4255

Type strain:

Species: Dietzia maris

Culture col. no.: DSM 44904, CCUG 50875, CIP 50875, IMMIB RIV-399, JCM 13663, IFM 10668, NBRC 102147

Strain history: IFM 10668 <-- DSM 44904 <-- A. F. Yassin IMMIB RIV-399.

NCBI tax ID(s): 321318 (species)

SI-ID 215521

DSM 44904, CCUG 50875, JCM 13663, NBRC 102147, CIP 50875

Special Collections

Other strains from Dietzia maris

Section

When using BacDive for research please cite our paper

Dietzia maris DSM 44904 is an aerobe, spore-forming, mesophilic bacterium that was isolated from perianal swab of a patient with bonmarrow transplantation.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Dietziaceae*
	Genus	*Dietzia*
	Species	**Dietzia maris**
	Full Scientific Name (LPSN)	Dietzia maris (Nesterenko et al. 1982 ex Harrison 1929) Rainey et al. 1995

	Synonym	Dietzia cinnamea
	Synonym	Rhodococcus maris

Information on morphological and physiological properties Morphology

[Ref.: #31593]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %91.096
[Ref.: #125439]	Gram stain	positive Confidence in %99.3

[Ref.: #31593]	Cell shape	rod-shaped

[Ref.: #125438]	Motility	no Confidence in %90.6

[Ref.: #19885]	Colony color	Deep orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 2

[Ref.: #19885]	Colony color	Deep orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 3

[Ref.: #19885]	Colony color	Yellow orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 4

[Ref.: #19885]	Colony color	Yellow orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 5

[Ref.: #19885]	Colony color	Yellow orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 6

[Ref.: #19885]	Colony color	Yellow orange
[Ref.: #19885]	Incubation period	10-14 days
[Ref.: #19885]	Cultivation medium used	ISP 7

[Ref.: #31593]

Pigment production

yes

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 2

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 3

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 4

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 5

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 6

[Ref.: #19885]	Multicellular complex forming ability	no
[Ref.: #19885]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12188]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #12188]

Culture medium growth

[Ref.: #12188]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12188]

Culture medium composition

expand / minimize

[Ref.: #12188]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #12188]

Culture medium growth

[Ref.: #12188]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12188]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 2

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 3

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 4

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 5

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 6

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

[Ref.: #19885]

Culture medium

ISP 7

[Ref.: #19885]

Culture medium growth

[Ref.: #19885]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #12188]	growth	28 °C
[Ref.: #19885]	optimum	28 °C
[Ref.: #31593]	growth	22-45 °C
[Ref.: #31593]	optimum	35-45 °C
[Ref.: #59035]	growth	37 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #31593]			optimum	7
[Ref.: #31593]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31593]	Oxygen tolerance	aerobe
[Ref.: #59035]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %91.3

[Ref.: #31593]

Ability of spore formation

yes

[Ref.: #31593]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8(H₂), MK-7(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31593]	acetate ChEBI	+	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #31593]	glucose ChEBI	+	carbon source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #31593]	maltose ChEBI	+	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #31593]	catalase	+	1.11.1.6
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #19885]	363	-	-	+	+	-	-	+	-	-	+	-	not determinedn.d.	-	-	-	-	-	-	+	-	not determinedn.d.
[Ref.: #12188]	4349	+	-	+/-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19885]	697	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-
[Ref.: #12188]	14446	-	+/-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12188]	Sample type/isolated from	perianal swab of a patient with bonmarrow transplantation
[Ref.: #12188]	Country	Germany
[Ref.: #12188]	Country ISO 3 Code	DEU
[Ref.: #12188]	Continent	Europe

[Ref.: #59035]	Sample type/isolated from	Human perianal,bone-marrow transplantation
[Ref.: #59035]	Sampling date	1995
[Ref.: #59035]	Country	Germany
[Ref.: #59035]	Country ISO 3 Code	DEU
[Ref.: #59035]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Perianal swab of a human with a bone marrow transplant
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Infection	#Patient	#Swab
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ468339 (>99% sequence identity) for Dietzia from Microbeatlas

Aquatic Samples	9470
Soil Samples	4780
Animal Samples	31750
Plant Samples	1853
Total Samples	47853

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12188]	Pathogenicity (human)	yes, in single cases
[Ref.: #12188]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19885]	Biosafety level	2	Risk group

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12188]	Dietzia cinnamea partial 16S rRNA gene, type strain IMMIB RIV-399T	AJ920289	1486	GenBank ENA	321318 tax ID
[Ref.: #20218]	Dietzia cinnamea strain DSM 44904 16S ribosomal RNA gene, partial sequence	FJ468339	1442	GenBank ENA	321318 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Dietzia cinnamea NBRC 102147	GCA_001571065	contig	GenBank ENA	1223524 tax ID
[Ref.: #66792]	Dietzia cinnamea NBRC 102147	1223524.3	wgs	PATRIC	1223524 tax ID	*
[Ref.: #66792]	Dietzia cinnamea NBRC 102147	2675903565	draft	JGI IMG/M	1223524 tax ID	*

[Ref.: #12188]	GC-content	72.3 mol%
[Ref.: #67770]	GC-content	70.8 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Dietzia cinnamea NBRC 102147 PATRIC: 1223524.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	91.096	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.633	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	62.216	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	87.485	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	90.6	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Dietzia cinnamea NBRC 102147 NCBI: GCA_001571065
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	59.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	83.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	91.3

Availability in culture collections External links

[Ref.: #12188]

Culture collection no.

DSM 44904, CCUG 50875, CIP 50875, IMMIB RIV-399, JCM 13663, IFM 10668, NBRC 102147

[Ref.: #73751]

SI-ID 215521

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dietzia cinnamea sp. nov., a novel species isolated from a perianal swab of a patient with a bone marrow transplant.	Yassin AF, Hupfer H, Schaal KP	Int J Syst Evol Microbiol	10.1099/ijs.0.63863-0	2006	*

References

#12188

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44904

#19885

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31593

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27882 (see below)

#59035 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50875

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#73751

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID215521.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27882

IJSEM 641 2006 ( DOI 10.1099/ijs.0.63863-0 , PubMed 16514042 )

* These data were automatically processed and therefore are not curated

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Search for species Dietzia maris in external resources:
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Dietzia cinnamea NBRC 102147

Dietzia cinnamea NBRC 102147

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