Name: Delftia acidovorans NAT
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2946

Type strain:

Species: Delftia acidovorans

Strain Designation: NAT

Culture col. no.: DSM 17854

Strain history: <- J. Mayer, Uni. Konstanz; NAT

NCBI tax ID(s): 80866 (species)

SI-ID 398105

DSM 17854

Special Collections

DSMZ

Other strains from Delftia acidovorans

Section

Delftia acidovorans NAT is a Gram-negative human pathogen that was isolated from forest soil.

Gram-negative
human pathogen
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Delftia*
	Species	**Delftia acidovorans**
	Full Scientific Name (LPSN)	Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

	Synonym	Pseudomonas acidovorans
	Synonym	Comamonas acidovorans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7140]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)

[Ref.: #7140]

Culture medium growth

[Ref.: #7140]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7140]

Culture medium composition

expand / minimize

[Ref.: #7140]

Culture medium

MINERAL MEDIUM PH 7.25 (DSMZ Medium 465)

[Ref.: #7140]

Culture medium growth

[Ref.: #7140]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7140]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7140]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7140]	Sample type/isolated from	forest soil
[Ref.: #7140]	Geographic location (country and/or sea, region)	Konstanz
[Ref.: #7140]	Country	Germany
[Ref.: #7140]	Country ISO 3 Code	DEU
[Ref.: #7140]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7140]	Pathogenicity (human)	yes, in single cases
[Ref.: #7140]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Delftia acidovorans strain FDAARGOS_939	80866.53	complete	PATRIC	80866 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Delftia acidovorans strain FDAARGOS_939 strain Not applicable PATRIC: 80866.53
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Delftia acidovorans strain FDAARGOS_939 strain Not applicable PATRIC: 80866.53
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.393	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	82.133	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.855	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.939	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.06	no

Availability in culture collections External links

[Ref.: #7140]

Culture collection no.

DSM 17854

[Ref.: #72468]

SI-ID 398105

References

#7140

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17854

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72468

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398105.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Delftia acidovorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Delftia acidovorans strain FDAARGOS_939 strain Not applicable

Delftia acidovorans strain FDAARGOS_939 strain Not applicable

Change proposal

Change proposal