Strain identifier
BacDive ID: 2946
Type strain: 
Species: Delftia acidovorans
Strain Designation: NAT
Strain history: <- J. Mayer, Uni. Konstanz; NAT
NCBI tax ID(s): 80866 (species)
version 8.1 (current version)
General
@ref: 7140
BacDive-ID: 2946
DSM-Number: 17854
keywords: genome sequence, Bacteria, mesophilic, motile, human pathogen
description: Delftia acidovorans NAT is a mesophilic, motile human pathogen that was isolated from forest soil.
NCBI tax id
- NCBI tax id: 80866
- Matching level: species
strain history
- @ref: 7140
- history: <- J. Mayer, Uni. Konstanz; NAT
doi: 10.13145/bacdive2946.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Delftia
- species: Delftia acidovorans
- full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
synonyms
@ref synonym 20215 Pseudomonas acidovorans 20215 Comamonas acidovorans
@ref: 7140
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Delftia
species: Delftia acidovorans
full scientific name: Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999
strain designation: NAT
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.456 | |
| 69480 | 99.98 | negative |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 7140 | REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) | yes | https://mediadive.dsmz.de/medium/830c | Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 7140 | MINERAL MEDIUM PH 7.25 (DSMZ Medium 465) | yes | https://mediadive.dsmz.de/medium/465 | Name: MINERAL MEDIUM PH 7.25 (DSMZ Medium 465) Composition: Na2HPO4 x 2 H2O 3.5 g/l KH2PO4 1.0 g/l (NH4)2SO4 0.5 g/l MgCl2 x 6 H2O 0.1 g/l Ca(NO3)2 x 4 H2O 0.05 g/l Na2-EDTA 0.0005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l FeSO4 x 7 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 7140
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.955 |
Isolation, sampling and environmental information
isolation
- @ref: 7140
- sample type: forest soil
- geographic location: Konstanz
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 7140
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Delftia acidovorans strain FDAARGOS_939
- accession: 80866.53
- assembly level: complete
- database: patric
- NCBI tax ID: 80866
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.61 | no |
| flagellated | yes | 69.388 | no |
| gram-positive | no | 98.571 | no |
| anaerobic | no | 98.535 | no |
| halophile | no | 95.789 | no |
| spore-forming | no | 95.084 | no |
| thermophile | no | 99.589 | no |
| glucose-util | no | 61.541 | no |
| aerobic | yes | 93.506 | no |
| glucose-ferment | no | 87.665 | no |
External links
@ref: 7140
culture collection no.: DSM 17854
straininfo link
- @ref: 72468
- straininfo: 398105
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7140 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17854) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17854 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 72468 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398105.1 | StrainInfo: A central database for resolving microbial strain identifiers |