Delftia acidovorans (DSM 12586, SPB1)

Name: Delftia acidovorans (DSM 12586, SPB1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2944

Type strain

Strain Designation SPB1

Culture col. no. DSM 12586 SPB1

NCBI tax ID(s) 80866

Special Collections DSMZ

History DSMZ <- S. Schulz; SPB1

Links

Delftia acidovorans SPB1 is a bacterium that was isolated from sewage treatment plant.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 49327

DSM 12586

@ref 20215

Last LPSN update 2026-05-29 08:25:35

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Delftia

Species Delftia acidovorans

Full scientific name Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

Synonyms (2)

Comamonas acidovorans
Pseudomonas acidovorans

BacDive ID	Other strains from **Delftia acidovorans** (46)	Type strain
2941	D. acidovorans 2167, 7, DSM 39, ATCC 15668, DSM 50251, JCM ... (type strain)
2940	D. acidovorans D, DSM 1621
2945	D. acidovorans SPH-1, DSM 14801
2946	D. acidovorans NAT, DSM 17854
2947	D. acidovorans 4B, DSM 50053, ATCC 17406, ICPB 2701-24, ...
2948	D. acidovorans RYS-4, DSM 50057, ICPB 2785-105
134419	D. acidovorans CIP 103685, ATCC 43868
134786	D. acidovorans CIP 64.36, ATCC 9355, CCM 283, LMG 1801, ...
134909	D. acidovorans CIP 102740
136064	D. acidovorans 211-86, CIP 102239
138467	D. acidovorans CIP 60.79, ATCC 17438, LMG 5931, NCTC 9991, ...
138496	D. acidovorans CIP 60.78, ATCC 17439, NBIMCC 508
138679	D. acidovorans CIP 101917
141204	D. acidovorans CCUG 178 B, LMG 7097
141230	D. acidovorans CCUG 274 B, LMG 7098
141422	D. acidovorans CCUG 1686
141508	D. acidovorans CCUG 2485, LMG 1795
141519	D. acidovorans CCUG 2523, NRRL B-979, NCTC 2578
142852	D. acidovorans CCUG 15338, NCPPB 1968, ATCC 15005, JCM 6207, ...
144259	D. acidovorans CCUG 24015, LMG 2842
145983	D. acidovorans CCUG 30088
146359	D. acidovorans CCUG 31021
146866	D. acidovorans CCUG 32317
147311	D. acidovorans CCUG 33351
147452	D. acidovorans CCUG 33603
148063	D. acidovorans CCUG 34751
149688	D. acidovorans CCUG 38188 B
150058	D. acidovorans CCUG 38929
152266	D. acidovorans CCUG 46253
152274	D. acidovorans CCUG 46300
154626	D. acidovorans CCUG 54618
154717	D. acidovorans CCUG 54958
155020	D. acidovorans CCUG 56121
156752	D. acidovorans CCUG 64810
157329	D. acidovorans IMI 366616
160893	D. acidovorans JCM 10181
163415	D. acidovorans JCM 2784
165362	D. acidovorans JCM 6208, IAM 14412
165365	D. acidovorans JCM 6211, IAM 14413
165366	D. acidovorans JCM 6212, IAM 14414
165367	D. acidovorans JCM 6213, IAM 14415
165368	D. acidovorans JCM 6214, IAM 14416, IAM 1461
165369	D. acidovorans JCM 6215, IAM 14417, IAM 1482
165370	D. acidovorans JCM 6216, IAM 1492
165371	D. acidovorans JCM 6217, IAM 14418
165378	D. acidovorans JCM 6232

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97
125439	negative	99.27

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4687	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
4687	MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)		Medium recipe at MediaDive	Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4687	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.893

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Water treatment plant

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4687	sewage treatment plant	Radolfzell	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
4687	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1602781v1 assembly for Delftia lacustris FDAARGOS_890	complete	GCA_016027815	558537.13	558537	96.06

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1602781v1 assembly for Delftia lacustris FDAARGOS_890
BV-BRC: 558537.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	71.54	no
125439	gram_stain	BacteriaNetⓘ	negative	99.27	no
125439	motility	BacteriaNetⓘ	yes	84.99	no
125439	spore_formation	BacteriaNetⓘ	no	99.89	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Delftia lacustris strain FDAARGOS_890 strain Not applicable
PATRIC: 558537.13

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.00	no
125438	anaerobic	anaerobicⓘ	no	96.35	no
125438	spore-forming	spore-formingⓘ	no	86.36	no
125438	aerobic	aerobicⓘ	yes	87.89	no
125438	thermophilic	thermophileⓘ	no	97.29	no
125438	flagellated	motile2+ⓘ	yes	81.49	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Enantiomeric degradation of 2-(4-Sulfophenyl)Butyrate via 4-sulfocatechol in Delftia acidovorans SPB1.	Schulz S, Dong W, Groth U, Cook AM.	Appl Environ Microbiol	10.1128/aem.66.5.1905-1910.2000	2000

References

#4687	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12586
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Delftia acidovorans (DSM 12586, SPB1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_016027815

Genome-based predictions

Predictions

Literature

Literature

References

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