Name: Delftia acidovorans 2167
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 2941

Type strain:

Species: Delftia acidovorans

Strain Designation: 2167, 7

Culture col. no.: DSM 39, ATCC 15668, DSM 50251, JCM 5833, ACM 489, BCRC 14819, CCUG 12692, CCUG 14481, CECT 311, CIP 103021, IAM 12409, IFO 14950, JCM 6203, LMG 1226, LMG 6031, LMG 8910, LMG 8911, NBRC 14950, NCIMB 9681, NCTC 10683, IMET 10620, NCTC 10859

Strain history: CIP <- 1988, NCIMB <- T. Wiken, Pseudomonas acidovorans

NCBI tax ID(s): 1218107 (strain), 80866 (species)

SI-ID 87460

LMG 1226, ATCC 15668, CCUG 12692, CCUG 14481, CECT 311, DSM 39, DSM 50251, IMET 10620, JCM 5833, LMG 6031, LMG 8910, LMG 8911, NCIB 9681, NCTC 10683, NCTC 10859, NCIMB 9681, ACM 489, IAM 12409, CIP 103021, IFO 14950, JCM 6203, CCRC 14819, LMD 26.37, LMD 84.19, CFBP 2444, NCTC 1085, VTT E-86250, KCTC 2991, NBRC 14950, NCCB 26037, NCCB 84019, BCRC 14819, CBMAI 692, CBMAI 693, NCIM 2861, CDBB 583, CGMCC 1.3363

Special Collections

Other strains from Delftia acidovorans

Section

Delftia acidovorans 2167 is a Gram-negative human pathogen that was isolated from soil enriched with acetamide.

Gram-negative
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Delftia*
	Species	**Delftia acidovorans**
	Full Scientific Name (LPSN)	Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

	Synonym	Pseudomonas acidovorans
	Synonym	Comamonas acidovorans

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2038]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #2038]

Culture medium growth

[Ref.: #2038]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2038]

Culture medium composition

expand / minimize

[Ref.: #40510]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40510]

Culture medium growth

[Ref.: #40510]

Culture medium composition

expand / minimize

[Ref.: #116024]

Culture medium

CIP Medium 3

[Ref.: #116024]

Culture medium growth

[Ref.: #116024]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2038]	growth	30 °C
[Ref.: #40510]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2038]	23342	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2038]	Sample type/isolated from	soil enriched with acetamide

[Ref.: #67770]	Sample type/isolated from	Soil enriched with acetamide

[Ref.: #116024]	Sample type/isolated from	Environment, Soil enriched with acetamide
* marker position based on {}

Isolation sources categories

#Engineered	-	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2038]	Pathogenicity (human)	yes, in single cases
[Ref.: #2038]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116024]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Delftia acidovorans 16S ribosomal RNA gene, partial sequence	AF078774	1520	GenBank ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans strain BCRC 14819 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014532	668	GenBank ENA	80866 tax ID	*
[Ref.: #20218]	C.acidovorans 16S rRNA	X59168	158	GenBank ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans gene for 16S rRNA, strain: IAM 12409	AB021417	1522	GenBank ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans strain LMG 1226 16S ribosomal RNA gene, partial sequence	EU024145	1318	GenBank ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans gene for 16S rRNA, partial sequence, strain: NBRC 14950	AB680719	1458	GenBank ENA	80866 tax ID	*
[Ref.: #124043]	Delftia acidovorans JCM 5833 gene for 16S ribosomal RNA, partial sequence.	LC462156	1455	GenBank ENA	80866 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Delftia acidovorans NBRC 14950	GCA_001598795	contig	GenBank ENA	1218107 tax ID
[Ref.: #66792]	Delftia acidovorans 2167	GCA_000741825	scaffold	GenBank ENA	80866 tax ID	*
[Ref.: #66792]	Delftia acidovorans NBRC 14950	1218107.6	wgs	PATRIC	1218107 tax ID	*
[Ref.: #66792]	Delftia acidovorans NBRC 14950	2731957715	draft	JGI IMG/M	1218107 tax ID	*
[Ref.: #66792]	Delftia acidovorans 2167	2609460141	draft	JGI IMG/M	80866 tax ID	*

[Ref.: #2038]	GC-content	66.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	67.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Delftia acidovorans NBRC 14950 PATRIC: 1218107.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Delftia acidovorans NBRC 14950 PATRIC: 1218107.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.384	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.855	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.937	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.939	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.86	no

Availability in culture collections External links

[Ref.: #2038]

Culture collection no.

DSM 39, ATCC 15668, DSM 50251, JCM 5833, ACM 489, BCRC 14819, CCUG 12692, CCUG 14481, CECT 311, CIP 103021, IAM 12409, IFO 14950, JCM 6203, LMG 1226, LMG 6031, LMG 8910, LMG 8911, NBRC 14950, NCIMB 9681, NCTC 10683, IMET 10620, NCTC 10859

[Ref.: #72463]

SI-ID 87460

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Metabolism	Nuclease expression in efficient polyhydroxyalkanoates-producing bacteria could yield cost reduction during downstream processing.	Rodriguez Gamero JE, Favaro L, Pizzocchero V, Lomolino G, Basaglia M, Casella S	Bioresour Technol	10.1016/j.biortech.2018.04.021	2018	*
Phylogeny	Delftia deserti sp. nov., isolated from a desert soil sample.	Li CT, Yan ZF, Chu X, Hussain F, Xian WD, Yunus Z, Hozzein WN, Abaydulla G, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0440-4	2015	*
Metabolism	Engineering Delftia acidovorans DSM39 to produce polyhydroxyalkanoates from slaughterhouse waste.	Romanelli MG, Povolo S, Favaro L, Fontana F, Basaglia M, Casella S	Int J Biol Macromol	10.1016/j.ijbiomac.2014.03.049	2014	*
Phylogeny	Delftia litopenaei sp. nov., a poly-beta-hydroxybutyrate-accumulating bacterium isolated from a freshwater shrimp culture pond.	Chen WM, Lin YS, Sheu DS, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijs.0.037507-0	2011	*
Phylogeny	Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge.	Shigematsu T, Yumihara K, Ueda Y, Numaguchi M, Morimura S, Kida K	Int J Syst Evol Microbiol	10.1099/ijs.0.02285-0	2003	*
Phylogeny	Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov.	Wen A, Fegan M, Hayward C, Chakraborty S, Sly LI	Int J Syst Bacteriol	10.1099/00207713-49-2-567	1999	*
Phylogeny	Phenylalanine hydroxylase and isozymes of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase in relationship to the phylogenetic position of Pseudomonas acidovorans (Ps. sp. ATCC 11299a).	Berry A, Johnson JL, Jensen RA	Arch Microbiol	10.1007/BF00446736	1985	*
	Polyphasic characterization of Delftia acidovorans ESM-1, a facultative methylotrophic bacterium isolated from rhizosphere of Eruca sativa.	Khalifa AYZ, AlMalki M	Saudi J Biol Sci	10.1016/j.sjbs.2018.05.015	2018	*
	Draft Genome Assembly of Delftia acidovorans Type Strain 2167.	Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL	Genome Announc	10.1128/genomeA.00917-14	2014	*

References

#2038

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 39

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40510 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72463

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87460.1 )

#116024 Collection of Institut Pasteur ; Curators of the CIP; CIP 103021

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Delftia acidovorans in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Delftia acidovorans NBRC 14950

Delftia acidovorans NBRC 14950

Change proposal

Change proposal