Name: Delftia acidovorans 2167
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2941

Type strain:

Species: Delftia acidovorans

Strain Designation: 2167, 7

Culture col. no.: DSM 39, ATCC 15668, DSM 50251, JCM 5833, ACM 489, BCRC 14819, CCUG 12692, CCUG 14481, CECT 311, CIP 103021, IAM 12409, IFO 14950, JCM 6203, LMG 1226, LMG 6031, LMG 8910, LMG 8911, NBRC 14950, NCIMB 9681, NCTC 10683

Strain history: Y. Kosako 85014 <-- Nissui Pharm. Co., Ltd. <-- ATCC 15668 <-- R. Hugh 2167 <-- Tech. Hogesch., Delft.

NCBI tax ID(s): 1218107 (strain), 80866 (species)

Other strains from Delftia acidovorans

Section

Delftia acidovorans 2167 is a mesophilic human pathogen that was isolated from soil enriched with acetamide.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Delftia*
	Species	**Delftia acidovorans**
	Full Scientific Name (PNU)	Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

	Synonym	Pseudomonas acidovorans
	Synonym	Comamonas acidovorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2038]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #2038]

Culture medium growth

[Ref.: #2038]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #2038]

Culture medium composition

expand / minimize

[Ref.: #40510]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40510]

Culture medium growth

[Ref.: #40510]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #2038]	growth	30 °C
[Ref.: #40510]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #2038]	Temperature range	mesophilic
[Ref.: #40510]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #2038]	20733	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	+	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2038]	Sample type/isolated from	soil enriched with acetamide

[Ref.: #67770]	Sample type/isolated from	Soil enriched with acetamide
* marker position based on {}

Isolation sources categories

#Engineered	-	-
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2038]	Pathogenicity (human)	yes, in single cases
[Ref.: #2038]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Delftia acidovorans 16S ribosomal RNA gene, partial sequence	AF078774	1520	ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans strain BCRC 14819 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014532	668	ENA	80866 tax ID	*
[Ref.: #20218]	C.acidovorans 16S rRNA	X59168	158	ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans gene for 16S rRNA, strain: IAM 12409	AB021417	1522	ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans strain LMG 1226 16S ribosomal RNA gene, partial sequence	EU024145	1318	ENA	80866 tax ID	*
[Ref.: #20218]	Delftia acidovorans gene for 16S rRNA, partial sequence, strain: NBRC 14950	AB680719	1458	ENA	80866 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Delftia acidovorans 2167	GCA_000741825	scaffold	GenBank	80866 tax ID	*
[Ref.: #66792]	Delftia acidovorans NBRC 14950	1218107.6	wgs	PATRIC	1218107 tax ID	*
[Ref.: #66792]	Delftia acidovorans NBRC 14950	2731957715	draft	JGI IMG/M	1218107 tax ID	*
[Ref.: #66792]	Delftia acidovorans 2167	2609460141	draft	JGI IMG/M	80866 tax ID	*
[Ref.: #67770]	Delftia acidovorans NBRC 14950 NBRC 14950	GCA_001598795	contig	GenBank	1218107 tax ID
[Ref.: #66792]	Listeria innocua FSL L7-0313	GCA_014228255	contig	PATRIC	1642 tax ID	*

[Ref.: #2038]	GC-content	66.6 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	67.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #2038]

Culture collection no.

DSM 39, ATCC 15668, DSM 50251, JCM 5833, ACM 489, BCRC 14819, CCUG 12692, CCUG 14481, CECT 311, CIP 103021, IAM 12409, IFO 14950, JCM 6203, LMG 1226, LMG 6031, LMG 8910, LMG 8911, NBRC 14950, NCIMB 9681, NCTC 10683

[Ref.: #20218]

Associated Passport(s) in StrainInfo

8061, 8055, 8062

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phenylalanine hydroxylase and isozymes of 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase in relationship to the phylogenetic position of Pseudomonas acidovorans (Ps. sp. ATCC 11299a).	Berry A, Johnson JL, Jensen RA	Arch Microbiol	10.1007/BF00446736	1985	*
Phylogeny	Phylogenetic relationships among members of the Comamonadaceae, and description of Delftia acidovorans (den Dooren de Jong 1926 and Tamaoka et al. 1987) gen. nov., comb. nov.	Wen A, Fegan M, Hayward C, Chakraborty S, Sly LI	Int J Syst Bacteriol	10.1099/00207713-49-2-567	1999	*
Phylogeny	Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge.	Shigematsu T, Yumihara K, Ueda Y, Numaguchi M, Morimura S, Kida K	Int J Syst Evol Microbiol	10.1099/ijs.0.02285-0	2003	*
Phylogeny	Delftia litopenaei sp. nov., a poly-beta-hydroxybutyrate-accumulating bacterium isolated from a freshwater shrimp culture pond.	Chen WM, Lin YS, Sheu DS, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijs.0.037507-0	2011	*
Metabolism	Engineering Delftia acidovorans DSM39 to produce polyhydroxyalkanoates from slaughterhouse waste.	Romanelli MG, Povolo S, Favaro L, Fontana F, Basaglia M, Casella S	Int J Biol Macromol	10.1016/j.ijbiomac.2014.03.049	2014	*
Phylogeny	Delftia deserti sp. nov., isolated from a desert soil sample.	Li CT, Yan ZF, Chu X, Hussain F, Xian WD, Yunus Z, Hozzein WN, Abaydulla G, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0440-4	2015	*
Metabolism	Nuclease expression in efficient polyhydroxyalkanoates-producing bacteria could yield cost reduction during downstream processing.	Rodriguez Gamero JE, Favaro L, Pizzocchero V, Lomolino G, Basaglia M, Casella S	Bioresour Technol	10.1016/j.biortech.2018.04.021	2018	*
	Draft Genome Assembly of Delftia acidovorans Type Strain 2167.	Davenport KW, Daligault HE, Minogue TD, Bishop-Lilly KA, Bruce DC, Chain PS, Coyne SR, Frey KG, Jaissle J, Koroleva GI, Ladner JT, Palacios GF, Redden CL, Scholz MB, Teshima H, Johnson SL	Genome Announc	10.1128/genomeA.00917-14	2014	*
	Polyphasic characterization of Delftia acidovorans ESM-1, a facultative methylotrophic bacterium isolated from rhizosphere of Eruca sativa.	Khalifa AYZ, AlMalki M	Saudi J Biol Sci	10.1016/j.sjbs.2018.05.015	2018	*

References

#2038

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 39

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40510 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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