Delftia acidovorans (DSM 14801, SPH-1)

Name: Delftia acidovorans (DSM 14801, SPH-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2945

Type strain

Strain Designation SPH-1

Culture col. no. DSM 14801 SPH-1

NCBI tax ID(s) 80866

Special Collections DSMZ

History <- D. Schleheck; SPH-1

Links

Delftia acidovorans SPH-1 is a bacterium that was isolated from sludge from communal sewage treatment plant.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 215405

DSM 14801

@ref 20215

Last LPSN update 2026-02-09 11:18:23

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Delftia

Species Delftia acidovorans

Full scientific name Delftia acidovorans (den Dooren de Jong 1926) Wen et al. 1999

Synonyms (2)

Comamonas acidovorans
Pseudomonas acidovorans

BacDive ID	Other strains from **Delftia acidovorans** (47)	Type strain
2941	D. acidovorans 2167, 7, DSM 39, ATCC 15668, DSM 50251, JCM ... (type strain)
2940	D. acidovorans D, DSM 1621
2944	D. acidovorans SPB1, DSM 12586
2946	D. acidovorans NAT, DSM 17854
2947	D. acidovorans 4B, DSM 50053, ATCC 17406, ICPB 2701-24, ...
2948	D. acidovorans RYS-4, DSM 50057, ICPB 2785-105
100614	D. acidovorans STI05007(IMET), pStrIII, Str.III,
134419	D. acidovorans CIP 103685, ATCC 43868
134786	D. acidovorans CIP 64.36, ATCC 9355, CCM 283, LMG 1801, ...
134909	D. acidovorans CIP 102740
136064	D. acidovorans 211-86, CIP 102239
138467	D. acidovorans CIP 60.79, ATCC 17438, LMG 5931, NCTC 9991, ...
138496	D. acidovorans CIP 60.78, ATCC 17439, NBIMCC 508
138679	D. acidovorans CIP 101917
141204	D. acidovorans CCUG 178 B, LMG 7097
141230	D. acidovorans CCUG 274 B, LMG 7098
141422	D. acidovorans CCUG 1686
141508	D. acidovorans CCUG 2485, LMG 1795
141519	D. acidovorans CCUG 2523, NRRL B-979, NCTC 2578
142852	D. acidovorans CCUG 15338, NCPPB 1968, ATCC 15005, JCM 6207, ...
144259	D. acidovorans CCUG 24015, LMG 2842
145983	D. acidovorans CCUG 30088
146359	D. acidovorans CCUG 31021
146866	D. acidovorans CCUG 32317
147311	D. acidovorans CCUG 33351
147452	D. acidovorans CCUG 33603
148063	D. acidovorans CCUG 34751
149688	D. acidovorans CCUG 38188 B
150058	D. acidovorans CCUG 38929
152266	D. acidovorans CCUG 46253
152274	D. acidovorans CCUG 46300
154626	D. acidovorans CCUG 54618
154717	D. acidovorans CCUG 54958
155020	D. acidovorans CCUG 56121
156752	D. acidovorans CCUG 64810
157329	D. acidovorans IMI 366616
160893	D. acidovorans JCM 10181
163415	D. acidovorans JCM 2784
165362	D. acidovorans JCM 6208, IAM 14412
165365	D. acidovorans JCM 6211, IAM 14413
165366	D. acidovorans JCM 6212, IAM 14414
165367	D. acidovorans JCM 6213, IAM 14415
165368	D. acidovorans JCM 6214, IAM 14416, IAM 1461
165369	D. acidovorans JCM 6215, IAM 14417, IAM 1482
165370	D. acidovorans JCM 6216, IAM 1492
165371	D. acidovorans JCM 6217, IAM 14418
165378	D. acidovorans JCM 6232

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.5
125439	negative	98.5

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
5551	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)		Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
5551	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		98.7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Water treatment plant
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
5551	sludge from communal sewage treatment plant	Constance	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
5551	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1866v1 assembly for Delftia acidovorans SPH-1	complete	GCA_000018665	398578.5	641228489	398578	99.42
124043	ASM1602777v1 assembly for Delftia acidovorans FDAARGOS_891	complete	GCA_016027775	80866.55		80866	96.16

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Delftia acidovorans SPH-1
NCBI: GCA_000018665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.70	no
125439	motility	BacteriaNetⓘ	yes	88.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	67.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Delftia acidovorans SPH-1 SPH-1
NCBI: GCA_000018665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.50	no
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	aerobic	aerobicⓘ	yes	86.84	no
125438	spore-forming	spore-formingⓘ	no	86.98	no
125438	thermophilic	thermophileⓘ	no	96.27	yes
125438	flagellated	motile2+ⓘ	yes	82.31	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation.	Vasquez-Pineros MA, Martinez-Lavanchy PM, Jehmlich N, Pieper DH, Rincon CA, Harms H, Junca H, Heipieper HJ.	BMC Microbiol	10.1186/s12866-018-1255-z	2018
Transcriptome	Social bacteria and asocial eukaryotes.	Galperin MY.	Environ Microbiol	10.1111/j.1462-2920.2007.01552.x	2008
	Lead Drives Complex Dynamics of a Conjugative Plasmid in a Bacterial Community.	Cyriaque V, Madsen JS, Fievez L, Leroy B, Hansen LH, Bureau F, Sorensen SJ, Wattiez R	Front Microbiol	10.3389/fmicb.2021.655903	2021
Genetics	The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis.	Olm MR, Butterfield CN, Copeland A, Boles TC, Thomas BC, Banfield JF	mBio	10.1128/mBio.01969-16	2017
Metabolism	Molecular characterisation of phaCAB from Comamonas sp. EB172 for functional expression in Escherichia coli JM109.	Yee LN, Chuah JA, Chong ML, Phang LY, Raha AR, Sudesh K, Hassan MA	Microbiol Res	10.1016/j.micres.2011.12.006	2012
Enzymology	Purification, characterization and amino acid sequence of a novel enzyme, D-threo-3-hydroxyaspartate dehydratase, from Delftia sp. HT23.	Maeda T, Takeda Y, Murakami T, Yokota A, Wada M	J Biochem	10.1093/jb/mvq106	2010
Pathogenicity	New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.	Van Houdt R, Monchy S, Leys N, Mergeay M	Antonie Van Leeuwenhoek	10.1007/s10482-009-9345-4	2009
Metabolism	Different bacterial strategies to degrade taurocholate.	Rosch V, Denger K, Schleheck D, Smits TH, Cook AM	Arch Microbiol	10.1007/s00203-008-0357-7	2008
Enzymology	Bacterial sulfite dehydrogenases in organotrophic metabolism: separation and identification in Cupriavidus necator H16 and in Delftia acidovorans SPH-1.	Denger K, Weinitschke S, Smits THM, Schleheck D, Cook AM	Microbiology (Reading)	10.1099/mic.0.2007/011650-0	2008
Metabolism	Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.	Schleheck D, Knepper TP, Fischer K, Cook AM	Appl Environ Microbiol	10.1128/AEM.70.7.4053-4063.2004	2004

References

#5551	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14801
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Delftia acidovorans (DSM 14801, SPH-1)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000018665

Genome-based predictions

Predictions

Literature

Literature

References

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