Clostridium sporogenes (DSM 46279, IMET 10863, 15Rga)

Name: Clostridium sporogenes (DSM 46279, IMET 10863, 15Rga)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 2715

Type strain

Strain Designation 15Rga

Culture col. no. DSM 46279 IMET 10863 15Rga

NCBI tax ID(s) 1509

Special Collections DSMZ

History DSMZ <- IMET <- Schloßberger, Hyg. Inst., Jena, 15Rga

Links

Clostridium sporogenes 15Rga is an anaerobe bacterium of the family Clostridiaceae.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 50794

DSM 46279,IMET 10863

@ref 20215

Last LPSN update 2026-05-29 08:25:32

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Clostridium

Species Clostridium sporogenes

Full scientific name Clostridium sporogenes (Metchnikoff 1908) Bergey et al. 1923 (Approved Lists 1980)

Synonyms (1)

"Bacillus sporogenes"

BacDive ID	Other strains from **Clostridium sporogenes** (25)	Type strain
2710	C. sporogenes McClung 2004, 388, DSM 795, ATCC 3584, IFO ... (type strain)
130932	C. sporogenes 2PG-426-CC-2, DSM 29422
2707	C. sporogenes W28delta, DSM 633
2708	C. sporogenes H6j, DSM 634
2709	C. sporogenes McClung 2003, 3679, Cameron's putrefactive ...
2711	C. sporogenes McClung 2006, 2006, DSM 1446, ATCC 11437, ...
2712	C. sporogenes SR 5, SR5, DSM 1664, ATCC 19404, CIP 79.3, ...
2714	C. sporogenes DSM 46278, IMET 10860, SG 272
134401	C. sporogenes AU297, CIP 108177
136740	C. sporogenes GO 1, CIP 60.53
137136	C. sporogenes AU298, CIP 108178
138778	C. sporogenes 51, CIP 79.39
141391	C. sporogenes CCUG 1388
142431	C. sporogenes CCUG 12462
151851	C. sporogenes CCUG 45049
152722	C. sporogenes CCUG 47475
152930	C. sporogenes CCUG 48045
153019	C. sporogenes CCUG 48328
154094	C. sporogenes CCUG 52331
156952	C. sporogenes CCUG 67315
165625	C. sporogenes JCM 7831, ATCC 6015, IAM 19003, NCTC 6084
165628	C. sporogenes JCM 7835, IAM 19004
165629	C. sporogenes JCM 7836, IAM 19016
165634	C. sporogenes JCM 7841, IAM 19005
165635	C. sporogenes JCM 7849, IAM 19234

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12503	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
12503	FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)		Medium recipe at MediaDive	Name: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Deionized water

Culture temp

@ref	Growth	Type	Temperature (°C)
12503	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
12503	anaerobe
125439	anaerobe	99.51

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12503	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM4612765v1 assembly for Clostridium caseinilyticum DSM 46279	complete	GCA_046127655		1509	99.18
66792	Clostridium sporogenes strain FDAARGOS_1471	complete		1509.223	1509	97.68
66792	Clostridium sporogenes strain FDAARGOS_1471	complete		1509.231	1509	97.68
66792	Clostridium sporogenes strain FDAARGOS_1471	complete		1509.214	1509	97.68
124043	ASM1993319v1 assembly for Clostridium sporogenes FDAARGOS_1471	chromosome	GCA_019933195	1509.206	1509	52.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Clostridium sporogenes strain DSM 46279 16S ribosomal RNA gene, partial sequence.	PV016864	1518		1509
124043	Clostridium sporogenes strain DSM 46279 16S ribosomal RNA gene, partial sequence.	PV031527	1458		1509

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4612765v1 assembly for Clostridium caseinilyticum DSM 46279
NCBI: GCA_046127655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.51	no
125439	gram_stain	BacteriaNetⓘ	positive	69.97	no
125439	motility	BacteriaNetⓘ	yes	68.14	no
125439	spore_formation	BacteriaNetⓘ	yes	64.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Clostridium sporogenes strain FDAARGOS_1471 strain Not applicable
PATRIC: 1509.206

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.75	no
125438	anaerobic	anaerobicⓘ	yes	89.86	yes
125438	spore-forming	spore-formingⓘ	yes	76.90	no
125438	aerobic	aerobicⓘ	no	97.09	no
125438	thermophilic	thermophileⓘ	no	91.84	yes
125438	flagellated	motile2+ⓘ	yes	81.43	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Biotechnology	Clostridium caseinilyticum sp. nov., a close relative of Clostridium tepidum and Clostridium sporogenes, isolated from spoiled cheese and silage.	Shani N, Zago M, Berthoud H, Marzohl D, Michellod E, Gindro K, Giraffa G, Arias-Roth E.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006875	2025

References

#12503	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46279
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Clostridium sporogenes (DSM 46279, IMET 10863, 15Rga)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_046127655

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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