Name: Clostridium sporosphaeroides DSM 1294
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 2716

Type strain:

Species: Clostridium sporosphaeroides

Culture col. no.: DSM 1294, ATCC 25781, NCIB 10672, VPI 4527, NCIMB 10672

Strain history: <- ATCC <- L. DS. Smith, Virginia Polytechnical Institute and State University, Blacksburg, USA; VPI 4527

NCBI tax ID(s): 1121334 (strain), 1549 (species)

SI-ID 125562

ATCC 25781, NCIB 10672, DSM 1294, NCIMB 10672, BCRC 14527, CCRC 14527, VTT E-062947, LMG 28907

Section

Clostridium sporosphaeroides DSM 1294 is an anaerobe, mesophilic, Gram-positive bacterium of the family Clostridiaceae.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium sporosphaeroides**
	Full Scientific Name (LPSN)	Clostridium sporosphaeroides Soriano and Soriano 1948 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #625]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #625]

Culture medium growth

[Ref.: #625]

Culture medium link

Medium recipe at MediaDive

[Ref.: #625]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #625]			growth	37 °C

[Ref.: #625]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #625]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.152

[Ref.: #625]

Name of produced compound

citrate lyase

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #625]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #625]	Clostridium sporosphaeroides 16S ribosomal RNA	M59116	1460	ENA	1549 tax ID
[Ref.: #20218]	C.sporosphaeroides 16S rRNA	X66002	1400	ENA	1549 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	[Clostridium] sporosphaeroides DSM 1294 VPI 4527	GCA_000383295	scaffold	GenBank	1121334 tax ID	*
[Ref.: #66792]	Clostridium sporosphaeroides DSM 1294	1121334.3	wgs	PATRIC	1121334 tax ID	*
[Ref.: #66792]	Clostridium sporosphaeroides DSM 1294	2519899647	draft	JGI IMG/M	1121334 tax ID	*

[Ref.: #625]

GC-content

27.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: [Clostridium] sporosphaeroides DSM 1294 VPI 4527 NCBI: GCA_000383295.1
[Ref.: #69481]	spore-forming	no	80	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: [Clostridium] sporosphaeroides DSM 1294 VPI 4527 NCBI: GCA_000383295.1
[Ref.: #69480]	motile	yes	83.596	no
[Ref.: #69480]	flagellated	no	64.276	no
[Ref.: #69480]	gram-positive	yes	56.45	no
[Ref.: #69480]	anaerobic	yes	99.508	no
[Ref.: #69480]	aerobic	no	98.744	yes
[Ref.: #69480]	halophile	no	91.399	no
[Ref.: #69480]	spore-forming	yes	55.251	no
[Ref.: #69480]	thermophile	no	97.581	yes
[Ref.: #69480]	glucose-util	yes	80.829	no
[Ref.: #69480]	glucose-ferment	yes	59.505	no

Availability in culture collections External links

[Ref.: #625]

Culture collection no.

DSM 1294, ATCC 25781, NCIB 10672, VPI 4527, NCIMB 10672

[Ref.: #72244]

SI-ID 125562

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caproicibacter fermentans gen. nov., sp. nov., a new caproate-producing bacterium and emended description of the genus Caproiciproducens.	Flaiz M, Baur T, Brahner S, Poehlein A, Daniel R, Bengelsdorf FR	Int J Syst Evol Microbiol	10.1099/ijsem.0.004283	2020	*
Phylogeny	Caproiciproducens galactitolivorans gen. nov., sp. nov., a bacterium capable of producing caproic acid from galactitol, isolated from a wastewater treatment plant.	Kim BC, Seung Jeon B, Kim S, Kim H, Um Y, Sang BI	Int J Syst Evol Microbiol	10.1099/ijsem.0.000665	2015	*
Metabolism	Production of hexanoic acid from D-galactitol by a newly isolated Clostridium sp. BS-1.	Jeon BS, Kim BC, Um Y, Sang BI	Appl Microbiol Biotechnol	10.1007/s00253-010-2827-5	2010	*

References

#625	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1294

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#72244

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125562.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Clostridium sporosphaeroides in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

[Clostridium] sporosphaeroides DSM 1294 VPI 4527

[Clostridium] sporosphaeroides DSM 1294 VPI 4527

Change proposal

Change proposal