Name: Stenotrophomonas maltophilia 560
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17554

Type strain:

Species: Stenotrophomonas maltophilia

Strain Designation: 560

Culture col. no.: DSM 24970, ATCC 13636, CCM 1639, CCTM La1858, CDC 3903, LMG 961, NCTC 10258, CCUG 72272

Strain history: <- CCM <- ATCC <- R. Hugh, George Washington University, USA

NCBI tax ID(s): 40324 (species)

SI-ID 6104

LMG 961, ATCC 13636, NCTC 10258, CCM 1639, CCUG 72272

Other strains from Stenotrophomonas maltophilia

Section

Stenotrophomonas maltophilia 560 is an aerobe, mesophilic, motile human pathogen that has multiple antibiotic resistances and was isolated from spinal fluid.

antibiotic resistance
motile
aerobe
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Stenotrophomonas*
	Species	**Stenotrophomonas maltophilia**
	Full Scientific Name (LPSN)	Stenotrophomonas maltophilia (Hugh 1981 ex Hugh and Ryschenkow 1961) Palleroni and Bradbury 1993

	Synonym	Xanthomonas maltophilia
	Synonym	Pseudomonas maltophilia
	Synonym	Stenotrophomonas africana

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #69480]	Motility	yes Confidence in %96.079

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17812]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #17812]

Culture medium growth

[Ref.: #17812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17812]

Culture medium composition

expand / minimize

[Ref.: #17812]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #17812]

Culture medium growth

[Ref.: #17812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17812]

Culture medium composition

expand / minimize

[Ref.: #17812]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #17812]

Culture medium growth

[Ref.: #17812]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17812]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17812]			growth	28 °C
[Ref.: #63801]			growth	30 °C

[Ref.: #17812]	Temperature range	mesophilic
[Ref.: #63801]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63801]

Oxygen tolerance

aerobe

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Test 4

Reference

[Ref.: #17812]
Mueller-Hinton Agar
30

aerob
yes
Inhibition zone diameter in mm
20
resistant0
24-26
34
22-24
10-12
10
24-26
24
12
16
22-24
8
6
6-8
8-10
resistant0
24
14
12-14
10-12
6
10-12
14
8
resistant0
18-20
22
resistant0
6-8
32-34
8
resistant0
8
6
22

[Ref.: #17812]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
20
resistant0
26
36
26
10
8-10
28
26
10
14
30
10
8
8
8
resistant0
28
14
12
12
resistant0
10
14
10-12
8
20-22
22
resistant0
8
36
resistant0
resistant0
resistant0
resistant0
22-24

[Ref.: #17812]
Mueller-Hinton Agar
30

aerob
yes
Inhibition zone diameter in mm
20
resistant0
26
36-38
22-24
8
resistant0
28
26
10
14
22
resistant0
resistant0
resistant0
10
resistant0
26
20
10-12
10
resistant0
10-12
12-14
8-10
resistant0
20
22
resistant0
8
36-38
6
resistant0
6
resistant0
24-26

[Ref.: #17812]
Mueller-Hinton Agar
30

aerob
yes
Inhibition zone diameter in mm
20
resistant0
26
36-38
22-24
8
resistant0
28
26
10
14
22
resistant0
resistant0
resistant0
10
resistant0
26
20
10-12
10
resistant0
10-12
12-14
8-10
resistant0
20
22
resistant0
8
36-38
6
resistant0
6
resistant0
24-26

Only first 15 entries are displayed. Click here to see all.

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #17812]	17927	+	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17812]	Sample type/isolated from	spinal fluid

[Ref.: #63801]	Sample type/isolated from	Spinal fluid
[Ref.: #63801]	Sampling date	1962
[Ref.: #63801]	Country	USA
[Ref.: #63801]	Country ISO 3 Code	USA
[Ref.: #63801]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product

#Fluids

#Cerebrospinal fluid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17812]	Pathogenicity (human)	yes
[Ref.: #17812]	Pathogenicity (animal)	yes
[Ref.: #17812]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Stenotrophomonas maltophilia NCTC10258	GCA_900475405	complete	GenBank	40324 tax ID	*
[Ref.: #66792]	Stenotrophomonas maltophilia strain NCTC10258	40324.969	complete	PATRIC	40324 tax ID	*
[Ref.: #66792]	Stenotrophomonas maltophilia NCTC 10258	2847471704	complete	JGI IMG/M	40324 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stenotrophomonas maltophilia NCTC10258 NCBI: GCA_900475405.1
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stenotrophomonas maltophilia NCTC10258 NCBI: GCA_900475405.1
[Ref.: #69480]	flagellated	no	73.063	no
[Ref.: #69480]	gram-positive	no	98.157	no
[Ref.: #69480]	anaerobic	no	98.108	yes
[Ref.: #69480]	aerobic	yes	90.381	yes
[Ref.: #69480]	halophile	no	94.662	no
[Ref.: #69480]	spore-forming	no	95.057	no
[Ref.: #69480]	thermophile	no	99.56	yes
[Ref.: #69480]	glucose-util	yes	89.01	no
[Ref.: #69480]	motile	yes	87.817	no
[Ref.: #69480]	glucose-ferment	no	90.529	yes

Availability in culture collections External links

[Ref.: #17812]

Culture collection no.

DSM 24970, ATCC 13636, CCM 1639, CCTM La1858, CDC 3903, LMG 961, NCTC 10258, CCUG 72272

[Ref.: #86549]

SI-ID 6104

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Synthetic Peptides Derived from Bovine Lactoferricin Exhibit Antimicrobial Activity against E. coli ATCC 11775, S. maltophilia ATCC 13636 and S. enteritidis ATCC 13076.	Huertas Mendez NJ, Vargas Casanova Y, Gomez Chimbi AK, Hernandez E, Leal Castro AL, Melo Diaz JM, Rivera Monroy ZJ, Garcia Castaneda JE	Molecules	10.3390/molecules22030452	2017	*

References

#17812

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24970

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63801 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 72272

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#86549

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID6104.1 )

* These data were automatically processed and therefore are not curated

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Stenotrophomonas maltophilia NCTC10258

Stenotrophomonas maltophilia NCTC10258

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