Stenotrophomonas hibiscicola (CCUG 60518, NCPPB 1683, ATCC 19867)

Name: Stenotrophomonas hibiscicola (CCUG 60518, NCPPB 1683, ATCC 19867)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156140

Type strain

Culture col. no. CCUG 60518 NCPPB 1683 ATCC 19867 LMG 980 JCM 13361 1 more

NCBI tax ID(s) 86189 40324

Special Collections CCUG JCM

Links

Stenotrophomonas hibiscicola CCUG 60518 is a mesophilic prokaryote that was isolated from Plant,Hibiscus rosa-sinensis.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 6106

LMG 980,ATCC 19867,ICMP 3945,NCPPB 1683,PDDCC 3945,JCM 13361,CCUG 60518

@ref 20215

Last LPSN update 2025-12-16 10:07:29

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Lysobacterales

Family Lysobacteraceae

Genus Stenotrophomonas

Species Stenotrophomonas hibiscicola

Full scientific name Stenotrophomonas hibiscicola (Moniz 1963) Nguyen et al. 2024

Synonyms (2)

"Stenotrophomonas thermophila"
Pseudomonas hibiscicola

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.494
125439	negative	98.5

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.1

Spore formation

@ref	Spore formation	Confidence
125438		90.386
125439		94.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	+		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	+	3.4.21.4	from API zym
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
62337	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	+	+	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
62337	+	-	-	-	-	+	+	+	+	-	+	-	+	+	-	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)

Isolation

@ref	Sample type	Sampling date	Country	Country ISO 3 Code	Continent	Host species
62337	Plant,Hibiscus rosa-sinensis	1964	India	IND	Asia
67770	Plant (Hibiscus rosa-sinennsis)		India	IND	Asia	Hibiscus rosa-sinennsis

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Stenotrophomonas maltophilia ATCC 19867	contig		1279018.3		1279018	76
66792	ASM38206v1 assembly for Stenotrophomonas hibiscicola ATCC 19867	scaffold	GCA_000382065	1279018.5	2521172560	1279018	75.82

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pseudomonas hibiscicola gene for 16S rRNA, strain: ATCC 19867	AB021405	1519		86189
124043	[Pseudomonas] hibiscicola strain ATCC 19867 16S ribosomal RNA gene, partial sequence.	MT780275	1399		86189

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: [Pseudomonas] hibiscicola ATCC 19867
NCBI: GCA_000382065

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.10	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	motility	BacteriaNetⓘ	yes	86.10	no
125439	spore_formation	BacteriaNetⓘ	no	94.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: [Pseudomonas] hibiscicola ATCC 19867 ATCC 19867
NCBI: GCA_000382065.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	no
125438	anaerobic	anaerobicⓘ	no	96.82	no
125438	aerobic	aerobicⓘ	yes	83.53	no
125438	spore-forming	spore-formingⓘ	no	90.39	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	yes	72.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Functional characterization of a novel aminoglycoside phosphotransferase, APH(9)-Ic, and its variant from Stenotrophomonas maltophilia.	Shi W, Lu J, Feng C, Gao M, Li A, Liu S, Zhang L, Zhang X, Li Q, Lin H, Lin X, Li K, Zhang H, Hu Y, Wang G, Bao Q, Jiang W.	Front Cell Infect Microbiol	10.3389/fcimb.2022.1097561	2022
Genetics	Taxonogenomics reveal multiple novel genomospecies associated with clinical isolates of Stenotrophomonas maltophilia.	Patil PP, Kumar S, Midha S, Gautam V, Patil PB.	Microb Genom	10.1099/mgen.0.000207	2018
Genetics	GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas.	Vinuesa P, Ochoa-Sanchez LE, Contreras-Moreira B.	Front Microbiol	10.3389/fmicb.2018.00771	2018
Biotechnology	Biosynthesis of silver nanoparticles by Pseudomonas spp. isolated from effluent of an electroplating industry.	Punjabi K, Yedurkar S, Doshi S, Deshapnde S, Vaidya S	IET Nanobiotechnol	10.1049/iet-nbt.2016.0172	2017
Phylogeny	Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.	Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CA	Int J Syst Evol Microbiol	10.1099/ijs.0.019372-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62337	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60518
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Stenotrophomonas hibiscicola (CCUG 60518, NCPPB 1683, ATCC 19867)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000382065

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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