Name: Stenotrophomonas nitritireducens L2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 17555

Type strain:

Species: Stenotrophomonas nitritireducens

Strain Designation: L2

Culture col. no.: CCUG 46888, CIP 107228, LMG 22074, DSM 12575, ATCC BAA 12, JCM 13311

Strain history: CIP 107228 <-- A. Lipski L2.

NCBI tax ID(s): 83617 (species)

Other strains from Stenotrophomonas nitritireducens

S. nitritireducens B1910/29.1, DSM 12576, CCUG 54932

Section

Stenotrophomonas nitritireducens L2 is an aerobe, mesophilic bacterium that was isolated from laboratory scale biofilter.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Stenotrophomonas*
	Species	**Stenotrophomonas nitritireducens**
	Full Scientific Name (PNU)	Stenotrophomonas nitritireducens Finkmann et al. 2000

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.991

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4680]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #4680]

Culture medium growth

[Ref.: #4680]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #4680]

Culture medium composition

expand / minimize

[Ref.: #33707]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33707]

Culture medium growth

[Ref.: #33707]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #4680]	growth	30 °C
[Ref.: #33707]	growth	30 °C
[Ref.: #57385]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #4680]	Temperature range	mesophilic
[Ref.: #33707]	Temperature range	mesophilic
[Ref.: #57385]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #57385]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #57385]

Fatty acid	Percentage	ECL
C15:0 ISO	35.9	14.621
C11:0 iso	10.2	10.605
C14:0 ISO	9.4	13.618
C17:1 ω9c ISO	7.5	16.416
C15:1 ISO F	5.9	14.414
C15:0 ANTEISO	4.7	14.711
C11:0 ISO 3OH	4	12.09
C16:0 iso	3.3	15.626
C13:0 ISO 3OH	3.3	14.11
C12:0 ISO 3OH	2.9	13.098
C13:0 iso	1.9	12.612
C16:0	1.9	16
C14:0	1.8	14
C15:0	1.5	15
C12:0 3OH	1.2	13.455
C16:1 ω7c	1.1	15.819
C17:0 CYCLO	1.1	16.888
C16:1 ω9c	0.8	15.774
C17:0 iso	0.6	16.629
C13:0 2OH	0.5	14.191
C11:0 ANTEISO	0.4	10.693

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #4680]	22721	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4680]	Sample type/isolated from	laboratory scale biofilter
[Ref.: #4680]	Geographic location (country and/or sea, region)	Osnabrück
[Ref.: #4680]	Country	Germany
[Ref.: #4680]	Country ISO 3 Code	DEU
[Ref.: #4680]	Continent	Europe

[Ref.: #57385]	Sample type/isolated from	Biofilter,laboratory scale
[Ref.: #57385]	Sampling date	1992
[Ref.: #57385]	Geographic location (country and/or sea, region)	Osnabrück
[Ref.: #57385]	Country	Germany
[Ref.: #57385]	Country ISO 3 Code	DEU
[Ref.: #57385]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Experimental biofilter supplied with the waste gas of an animal-rendering plant
* marker position based on {}

Isolation sources categories

#Engineered	#Bioremediation	#Biofilter
#Engineered	#Laboratory	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ012229 (>99% sequence identity) for Stenotrophomonas from Microbeatlas

Aquatic Samples	1046
Soil Samples	667
Animal Samples	1355
Plant Samples	293
Total Samples	3361

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4680]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Stenotrophomonas nitritireducens 16S rRNA gene, strain L2	AJ012229	1513	ENA	83617 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Stenotrophomonas nitritireducens DSM 12575	GCA_001431425	contig	GenBank	83617 tax ID
[Ref.: #66792]	Stenotrophomonas nitritireducens strain DSM 12575	83617.3	wgs	PATRIC	83617 tax ID	*
[Ref.: #66792]	Stenotrophomonas nitritireducens DSM 12575	2713896755	draft	JGI IMG/M	83617 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Stenotrophomonas nitritireducens strain DSM 12575 PATRIC: 83617.6
[Ref.: #69480]	anaerobic	no	97.806	no
[Ref.: #69480]	gram-positive	no	99.991	no
[Ref.: #69480]	spore-forming	no	99.995	yes
[Ref.: #69480]	thermophile	no	99.956	no
[Ref.: #69480]	motile	yes	88.981	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Stenotrophomonas nitritireducens strain DSM 12575 PATRIC: 83617.6
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #4680]

Culture collection no.

CCUG 46888, CIP 107228, LMG 22074, DSM 12575, ATCC BAA 12, JCM 13311

[Ref.: #20218]

Associated Passport(s) in StrainInfo

118825, 118824

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Stenotrophomonas acidaminiphila sp. nov., a strictly aerobic bacterium isolated from an upflow anaerobic sludge blanket (UASB) reactor.	Assih EA, Ouattara AS, Thierry S, Cayol JL, Labat M, Macarie H	Int J Syst Evol Microbiol	10.1099/00207713-52-2-559	2002	*
Phylogeny	Stenotrophomonas ginsengisoli sp. nov., isolated from a ginseng field.	Kim HB, Srinivasan S, Sathiyaraj G, Quan LH, Kim SH, Bui TPN, Liang ZQ, Kim YJ, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.014662-0	2009	*
Phylogeny	Characterization of N2O-producing Xanthomonas-like isolates from biofilters as Stenotrophomonas nitritireducens sp. nov., Luteimonas mephitis gen. nov., sp. nov. and Pseudoxanthomonas broegbernensis gen. nov., sp. nov.	Finkmann W, Altendorf K, Stackebrandt E, Lipski A	Int J Syst Evol Microbiol	10.1099/00207713-50-1-273	2000	*

References

#4680

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12575

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33707 ; Curators of the CIP;
#57385 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46888

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Stenotrophomonas nitritireducens strain DSM 12575

Stenotrophomonas nitritireducens strain DSM 12575

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