Stenotrophomonas maltophilia DSM 21874 is an obligate aerobe, Gram-negative, motile human pathogen that has multiple antibiotic resistances and was isolated from tap water.
antibiotic resistance Gram-negative motile rod-shaped obligate aerobe human pathogen genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Lysobacterales |
| Family Lysobacteraceae |
| Genus Stenotrophomonas |
| Species Stenotrophomonas maltophilia |
| Full scientific name Stenotrophomonas maltophilia (Hugh 1981 ex Hugh and Ryschenkow 1961) Palleroni and Bradbury 1993 |
| Synonyms (3) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 16007 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 35980 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 16007 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 16007 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 120772 | CIP Medium 3 | Medium recipe at CIP |
| Test 1 | |
|---|---|
| @ref | 16007 |
| Medium | Mueller Hinton |
| Manual annotation | 1 |
| Inhibition zone diameter in mm | |
| Amikacin 30µg (disc) | 6 |
| Ampicillin 10µg (disc) | 0 |
| Aztreonam 30µg (disc) | 0 |
| Bacitracin 10Unit | 10 |
| Cefalotin 30µg (disc) | 0 |
| Cefazolin 30µg (disc) | 0 |
| Cefotaxime 30µg (disc) | 8 |
| Ceftriaxone 30µg (disc) | 0 |
| Chloramphenicol 30µg (disc) | 20 |
| Clindamycin 10µg (disc) | 0 |
| Colistin 10µg (disc) | 14 |
| Doxycycline 30µg (disc) | 20 |
| Erythromycin 15µg (disc) | 6 |
| Fosfomycin 50µg (disc) | 14-16 |
| Gentamycin 10µg (disc) | |
| Imipenem 10µg (disc) | 6 |
| Kanamycin 30µg (disc) | 0 |
| Lincomycin 15µg (disc) | 0 |
| Linezolid 10µg (disc) | 6 |
| Mezlocillin 30µg (disc) | 18-20 |
| Moxifloxacin 5µg (disc) | 30-32 |
| Neomycin 30µg (disc) | 0 |
| Nitrofurantoin 100µg (disc) | 0 |
| Norfloxacin 10µg (disc) | 14 |
| Nystatin 100Unit | 0 |
| Ofloxacin 5µg (disc) | 22 |
| Oxacillin 5µg (disc) | 0 |
| Penicillin G 6µg (disc) | 0 |
| Pipemidic acid 20µg (disc) | 10 |
| Piperacillin/Tazobactam 40µg (disc) | 18 |
| Polymyxin B 300Unit | 16 |
| Quinupristin/Dalfopristin 15µg (disc) | 0 |
| Teicoplanin 30µg (disc) | 0 |
| Tetracycline 30µg (disc) | 12-14 |
| Ticarcillin 75µg (disc) | 22 |
| Vancomycin 30µg (disc) | 0 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | - | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 120772 | 16947 ChEBI | citrate | - | carbon source | |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | + | assimilation | from API 20NE |
| 120772 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68369 | 4853 ChEBI | esculin | + | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | - | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | + | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | + | assimilation | from API 20NE |
| 120772 | 17632 ChEBI | nitrate | - | reduction | |
| 120772 | 17632 ChEBI | nitrate | - | respiration | |
| 68369 | 17632 ChEBI | nitrate | - | reduction | from API 20NE |
| 120772 | 16301 ChEBI | nitrite | - | reduction | |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| @ref | ChEBI | Metabolite | Is resistant | Resistance conc. | |
|---|---|---|---|---|---|
| 16007 | 28971 | Ampicillin | 10 µg (disc) | from Antibiotic test | |
| 16007 | 161680 | Aztreonam | 30 µg (disc) | from Antibiotic test | |
| 16007 | 124991 | Cefalotin | 30 µg (disc) | from Antibiotic test | |
| 16007 | 474053 | Cefazolin | 30 µg (disc) | from Antibiotic test | |
| 16007 | 29007 | Ceftriaxone | 30 µg (disc) | from Antibiotic test | |
| 16007 | 3745 | Clindamycin | 10 µg (disc) | from Antibiotic test | |
| 16007 | 6104 | Kanamycin | 30 µg (disc) | from Antibiotic test | |
| 16007 | 6472 | Lincomycin | 15 µg (disc) | from Antibiotic test | |
| 16007 | 7507 | Neomycin | 30 µg (disc) | from Antibiotic test | |
| 16007 | 71415 | Nitrofurantoin | 100 µg (disc) | from Antibiotic test | |
| 16007 | 7660 | Nystatin | 100 Unit | from Antibiotic test | |
| 16007 | 7809 | Oxacillin | 5 µg (disc) | from Antibiotic test | |
| 16007 | 18208 | Penicillin G | 6 µg (disc) | from Antibiotic test | |
| 16007 | Quinupristin/Dalfopristin | 15 µg (disc) | from Antibiotic test | ||
| 16007 | 29687 | Teicoplanin | 30 µg (disc) | from Antibiotic test | |
| 16007 | 28001 | Vancomycin | 30 µg (disc) | from Antibiotic test |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120772 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120772 | amylase | - | ||
| 68369 | arginine dihydrolase | - | 3.5.3.6 | from API 20NE |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 120772 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68369 | beta-glucosidase | + | 3.2.1.21 | from API 20NE |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 120772 | caseinase | + | 3.4.21.50 | |
| 120772 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68369 | cytochrome oxidase | - | 1.9.3.1 | from API 20NE |
| 120772 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120772 | gelatinase | +/- | ||
| 68369 | gelatinase | + | from API 20NE | |
| 120772 | lecithinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120772 | lipase | - | ||
| 120772 | lysine decarboxylase | + | 4.1.1.18 | |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120772 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120772 | oxidase | - | ||
| 120772 | protease | + | ||
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 120772 | tryptophan deaminase | - | ||
| 120772 | tween esterase | - | ||
| 120772 | urease | - | 3.5.1.5 | |
| 68369 | urease | - | 3.5.1.5 | from API 20NE |
| 68382 | valine arylamidase | + | from API zym |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 44233 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Environmental | #Aquatic | #Freshwater | |
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) | |
| #Engineered | #Built environment | - |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 16007 | tap water | Philadelphia | USA | USA | North America | 39.9526 | -75.1652 39.9526/-75.1652 |
Global distribution of 16S sequence LC507977 (>99% sequence identity) for Stenotrophomonas from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM143162v1 assembly for Stenotrophomonas geniculata ATCC 19374 = JCM 13324 | contig | 1336242 | 45.23 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 88.20 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.49 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.25 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 90.88 | no |
| 125438 | aerobic | aerobicⓘ | yes | 85.22 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 68.15 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| An efficient direct screening system for microorganisms that activate plant immune responses based on plant-microbe interactions using cultured plant cells. | Kurokawa M, Nakano M, Kitahata N, Kuchitsu K, Furuya T. | Sci Rep | 10.1038/s41598-021-86560-0 | 2021 | ||
| Phylogeny | Stenotrophomonas cyclobalanopsidis sp. nov., isolated from the leaf spot disease of Cyclobalanopsis patelliformis. | Bian DR, Xue H, Piao CG, Li Y | Antonie Van Leeuwenhoek | 10.1007/s10482-020-01453-y | 2020 | |
| Phylogeny | Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov. | Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CA | Int J Syst Evol Microbiol | 10.1099/ijs.0.019372-0 | 2010 |
| #16007 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21874 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #35980 | ; Curators of the CIP; |
| #44233 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 559 B |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68369 | Automatically annotated from API 20NE . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120772 | Collection of Institut Pasteur ; Curators of the CIP; CIP 106700 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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