Pseudomonas beteli (DSM 21257, ATCC 19861, CCUG 58727)

Name: Pseudomonas beteli (DSM 21257, ATCC 19861, CCUG 58727)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13142

Type strain

Culture col. no. DSM 21257 ATCC 19861 CCUG 58727 CFBP 4337 ICMP 2820 3 more

NCBI tax ID(s) 3384461

Special Collections DSMZ CCUG JCM

History <- National Collection of Plant Pathogenic Bacteria (NCPPB), Central Science Laboratory; NCPPB 323 LMG 978 <-- NCPPB 323 <-- W. Dowson.

Links

Pseudomonas beteli DSM 21257 is a mesophilic human pathogen that was isolated from Piper betle.

mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 6105

LMG 978,ATCC 19861,ICMP 2820,NCPPB 323,PDDCC 2820,CFBP 4337,JCM 13372,DSM 21257

@ref 20215

Last LPSN update 2026-02-09 11:21:03

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas beteli

Full scientific name Pseudomonas beteli corrig. (Ragunathan 1928) Savulescu 1947 (Approved Lists 1980)

Synonyms (3)

Pseudomonas betle
"Bacterium betle"
Stenotrophomonas beteli

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.494
125439	negative	97.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15595	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
15595	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15595	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125438		90.786
125439		97.9

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	+	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	-	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
15595	-	-	-	-	-	+	+	+	+	-	+	-	+	+	-	+	-	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
15595	Piper betle	Piper betle	Sri Lanka	LKA	Asia
67770	Piper betle	Piper betle	Sri Lanka	LKA	Asia

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
15595			2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM143166v1 assembly for Stenotrophomonas beteli LMG 978	contig	GCA_001431665	40324.141	2663763179	40324	57.25

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Stenotrophomonas maltophilia, 16S rRNA gene, strain LMG 978	AJ131919	1347	40324
15595	Stenotrophomonas maltophilia gene for 16S rRNA, strain: ATCC 19861	AB021406	1517	40324
124043	Stenotrophomonas maltophilia strain ATCC 19861 16S ribosomal RNA gene, partial sequence.	MN527020	491	40324
124043	Paenibacillus polymyxa strain LSU1 16S ribosomal RNA gene, partial sequence.	MT672504	1452	40324
124043	Stenotrophomonas maltophilia strain ATCC 19861 16S ribosomal RNA gene, partial sequence.	OM301903	1393	40324

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Stenotrophomonas maltophilia LMG 978
NCBI: GCA_001431665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.90	no
125439	motility	BacteriaNetⓘ	yes	85.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Stenotrophomonas maltophilia strain LMG 978
PATRIC: 40324.141

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.49	no
125438	anaerobic	anaerobicⓘ	no	97.74	no
125438	spore-forming	spore-formingⓘ	no	90.79	no
125438	aerobic	aerobicⓘ	yes	84.93	no
125438	thermophilic	thermophileⓘ	no	98.49	no
125438	flagellated	motile2+ⓘ	yes	69.54	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effect of volatile compounds produced by the cotton endophytic bacterial strain Bacillus sp. T6 against Verticillium wilt.	Zhang L, Wang Y, Lei S, Zhang H, Liu Z, Yang J, Niu Q.	BMC Microbiol	10.1186/s12866-022-02749-x	2023
Phylogeny	Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a greenland glacier ice core.	Sheridan PP, Miteva VI, Brenchley JE.	Appl Environ Microbiol	10.1128/aem.69.4.2153-2160.2003	2003
Phylogeny	Evaluation of matrix-assisted laser desorption ionization-time-of-flight mass spectrometry in comparison to 16S rRNA gene sequencing for species identification of nonfermenting bacteria.	Mellmann A, Cloud J, Maier T, Keckevoet U, Ramminger I, Iwen P, Dunn J, Hall G, Wilson D, Lasala P, Kostrzewa M, Harmsen D.	J Clin Microbiol	10.1128/jcm.00157-08	2008
Phylogeny	Identification and discrimination of bacteria using Fourier transform infrared spectroscopy.	Maity JP, Kar S, Lin CM, Chen CY, Chang YF, Jean JS, Kulp TR	Spectrochim Acta A Mol Biomol Spectrosc	10.1016/j.saa.2013.07.062	2013
Phylogeny	Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.	Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CA	Int J Syst Evol Microbiol	10.1099/ijs.0.019372-0	2010

References

#15595	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21257
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas beteli (DSM 21257, ATCC 19861, CCUG 58727)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001431665

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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