Strain identifier

BacDive ID: 13142

Type strain: No

Species: Pseudomonas beteli

Strain history: LMG 978 <-- NCPPB 323 <-- W. Dowson.

NCBI tax ID(s): 40324 (species)

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General

@ref: 15595

BacDive-ID: 13142

DSM-Number: 21257

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, human pathogen

description: Pseudomonas beteli DSM 21257 is a mesophilic, motile human pathogen that was isolated from Piper betle.

NCBI tax id

  • NCBI tax id: 40324
  • Matching level: species

strain history

@refhistory
15595<- NCPPB
67770LMG 978 <-- NCPPB 323 <-- W. Dowson.

doi: 10.13145/bacdive13142.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas beteli
  • full scientific name: Pseudomonas beteli corrig. (Ragunathan 1928) Savulescu 1947 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Bacterium betle
    20215Pseudomonas betle

@ref: 15595

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas maltophilia

full scientific name: Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes95.924
6948099.981negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15595NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
15595COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
15595positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.998

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase-1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
15595-----++++-+-++-+-++--

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
15595Piper betlePiper betleSri LankaLKAAsia
67770Piper betlePiper betleSri LankaLKAAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 15595
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Stenotrophomonas maltophilia, 16S rRNA gene, strain LMG 978AJ1319191347ena40324
15595Stenotrophomonas maltophilia gene for 16S rRNA, strain: ATCC 19861AB0214061517ena40324

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Stenotrophomonas maltophilia LMG 978GCA_001431665contigncbi40324
66792Stenotrophomonas maltophilia strain LMG 97840324.141wgspatric40324
66792Stenotrophomonas maltophilia LMG 9782663763179draftimg40324

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.141no
anaerobicno98.133no
halophileno93.365no
spore-formingno95.273no
glucose-utilyes87.413no
aerobicyes90.534no
flagellatedno76.146no
motileyes87.754no
thermophileno99.563yes
glucose-fermentno89.988no

External links

@ref: 15595

culture collection no.: DSM 21257, ATCC 19861, CCUG 58727, CFBP 4337, ICMP 2820, LMG 978, NCPPB 323, JCM 13372

straininfo link

  • @ref: 82350
  • straininfo: 6105

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20495025Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov.Ramos PL, Van Trappen S, Thompson FL, Rocha RCS, Barbosa HR, De Vos P, Moreira-Filho CAInt J Syst Evol Microbiol10.1099/ijs.0.019372-02010Brazil, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, *Nitrogen Fixation, Nucleic Acid Hybridization, Organic Agriculture, Phylogeny, RNA, Ribosomal, 16S/genetics, Saccharum/*microbiology, Sequence Analysis, DNA, Stenotrophomonas/*classification/genetics/*isolation & purification/physiologyGenetics
Phylogeny23973597Identification and discrimination of bacteria using Fourier transform infrared spectroscopy.Maity JP, Kar S, Lin CM, Chen CY, Chang YF, Jean JS, Kulp TRSpectrochim Acta A Mol Biomol Spectrosc10.1016/j.saa.2013.07.0622013Bacillus/*chemistry/classification/isolation & purification, Bacterial Proteins/chemistry, Lipids/chemistry, Sewage/microbiology, Spectroscopy, Fourier Transform Infrared/*methods, Stenotrophomonas maltophilia/*chemistry/classification/isolation & purificationEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15595Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21257)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21257
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82350Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID6105.1StrainInfo: A central database for resolving microbial strain identifiers