Name: Laceyella sacchari A 978
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16741

Type strain:

Species: Laceyella sacchari

Strain Designation: A 978

Culture col. no.: DSM 43356, ATCC 27375, CBS 701.70, CUB 618, IFO 13920, KCTC 9790, NBRC 13920, NCIB 10486, NCTC 10721, CCUG 7967, CBS 7001.70, JCM 3137, BCRC 13341, CCM 3274, CECT 5332, IMET 9713, JCM 3214, KACC 20089, LMG 21518, LMG 21673, MTCC 955, NCIMB 10486, NRRL B-16981, PCM 2375, VKM Ac-1360, VTT E-011981, PCM 237

Strain history: <- BCRC <- JCM <- KCC A-0214 <- CUB 618 <- J Lacey, A978

NCBI tax ID(s): 37482 (species)

SI-ID 45798

ATCC 27375, NCIB 10486, NCTC 10721, CCUG 7967, DSM 43356, IFO 13920, JCM 3137, CCM 3274, CCRC 13341, IMET 9713, JCM 3214, NCIMB 10486, NRRL B-16981, VKM Ac-1360, CBS 701.70, CBS 7001.70, KCTC 9790, LMG 21518, LMG21673, NBRC 13920, CECT 5332, BCRC 13341, KACC 20089, CDBB 156, VTT E-011981

Other strains from Laceyella sacchari

L. sacchari TA-124, DSM 43047, ATCC 14570, ...
L. sacchari A 64, DSM 43062, CBS 109.62, CCM ...
L. sacchari 43, DSM 43353, CBS 422.63, CUB ...
L. sacchari DSM 43354, ATCC 49855, CBS 319.66, ...
L. sacchari F 105, DSM 43789
L. sacchari F 112, DSM 43790
L. sacchari F 122, DSM 43791
L. sacchari STH00373(ZIMET), HKI 0373
L. sacchari CCUG 43286, CCM 3269
L. sacchari TE 14, DSM 44080
L. sacchari TN 7, DSM 44083
L. sacchari SCRIPP CNS015, DSM 44941
L. sacchari JCM 8040, BCRC 13302

Section

Laceyella sacchari A 978 is an aerobe, spore-forming, thermophilic human pathogen that has a Yellow-brown pigmentation and was isolated from bagasse.

Gram-positive
pigmented
spore-forming
aerobe
human pathogen
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Thermoactinomycetaceae*
	Genus	*Laceyella*
	Species	**Laceyella sacchari**
	Full Scientific Name (LPSN)	Laceyella sacchari (Lacey 1971) Yoon et al. 2005

	Synonym	Thermoactinomyces sacchari
	Synonym	Thermoactinomyces thalpophilus

Information on morphological and physiological properties Morphology

[Ref.: #22925]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #22924]	Pigment production	yes
[Ref.: #22924]	Pigment name	Yellow-brown

Multimedia content

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Caption:

Medium 554 50°C

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Information on culture and growth conditions Culture and growth conditions

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Medium recipe at MediaDive

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Culture medium composition

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Culture medium

CYC

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Culture medium

CZAPEK PEPTONE AGAR (DSMZ Medium 83)

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Culture medium growth

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Medium recipe at MediaDive

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Culture medium composition

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	Kind of temperature		Temperature
[Ref.: #10976]		growth	50 °C
[Ref.: #22923]		growth	55 °C
[Ref.: #22923]	no	growth	28 °C
[Ref.: #22924]		maximum	65 °C
[Ref.: #22924]		minimum	35 °C
[Ref.: #22925]		growth	55 °C
[Ref.: #22925]		minimum	30 °C
[Ref.: #45050]		growth	50 °C
[Ref.: #67770]		growth	50 °C
[Ref.: #67771]		growth	50 °C

[Ref.: #10976]	Temperature range	thermophilic
[Ref.: #22923]	Temperature range	thermophilic
[Ref.: #22923]	Temperature range	mesophilic
[Ref.: #22924]	Temperature range	thermophilic
[Ref.: #22924]	Temperature range	mesophilic
[Ref.: #22925]	Temperature range	thermophilic
[Ref.: #22925]	Temperature range	mesophilic
[Ref.: #45050]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #45050]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #22925]	Spore description	Endospores are produced on sporophores up to 3 µm long
[Ref.: #22925]	Type of spore	endospore
[Ref.: #22925]	Ability of spore formation	yes

[Ref.: #22925]	Name of produced compound	Melanin
[Ref.: #22926]	Name of produced compound	Hydrogen sulfide

	Salt	Tested relation		Salt conc.
[Ref.: #22923]	NaCl	no	growth	2	%(w/v)
[Ref.: #22925]	NaCl	no	growth	5	%(w/v)
[Ref.: #22925]	NaCl	inconsistent	growth	1	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9, MK-8
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22925]	adenine ChEBI	-	hydrolysis
[Ref.: #22926]	arabinose ChEBI	+/-	growth
[Ref.: #22925]	arbutin ChEBI	+/-	hydrolysis
[Ref.: #22925]	casein	+	hydrolysis
[Ref.: #22925]	cellulose ChEBI	-	growth
[Ref.: #22925]	cellulose ChEBI	-	hydrolysis
[Ref.: #22925]	chitin ChEBI	+/-	hydrolysis
[Ref.: #22924]	D-fructose ChEBI	+	growth
[Ref.: #22925]	D-fructose ChEBI	+	growth
[Ref.: #22923]	D-glucose ChEBI	+	builds acid from
[Ref.: #22925]	D-glucose ChEBI	+	growth
[Ref.: #22924]	D-mannitol ChEBI	+	growth
[Ref.: #22925]	D-mannitol ChEBI	+	growth
[Ref.: #22923]	D-mannose ChEBI	+	builds acid from
[Ref.: #22925]	D-mannose ChEBI	+/-	growth
[Ref.: #22923]	D-rhamnose ChEBI	-	builds acid from
[Ref.: #22925]	D-xylose ChEBI	-	growth
[Ref.: #22923]	dna ChEBI	+	hydrolysis
[Ref.: #22925]	dna ChEBI	+	hydrolysis
[Ref.: #22925]	elastin ChEBI	+	hydrolysis
[Ref.: #22925]	esculin ChEBI	+/-	hydrolysis
[Ref.: #22926]	fructose ChEBI	+	growth
[Ref.: #22924]	gelatin ChEBI	-	hydrolysis
[Ref.: #22925]	gelatin ChEBI	+	hydrolysis
[Ref.: #22926]	gelatin ChEBI	-	hydrolysis
[Ref.: #22926]	glucose ChEBI	+	growth
[Ref.: #22923]	glycerol ChEBI	+	builds acid from
[Ref.: #22924]	glycine ChEBI	+	growth
[Ref.: #22926]	glycine ChEBI	-	growth
[Ref.: #22925]	guanine ChEBI	-	hydrolysis
[Ref.: #22923]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #22924]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #22925]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #22925]	L-arabinose ChEBI	+/-	growth
[Ref.: #22924]	L-lysine ChEBI	-	growth
[Ref.: #22924]	L-proline ChEBI	-	growth
[Ref.: #22926]	L-proline ChEBI	-	growth
[Ref.: #22924]	L-rhamnose ChEBI	-	growth
[Ref.: #22925]	L-rhamnose ChEBI	-	growth
[Ref.: #22926]	L-rhamnose ChEBI	-	growth
[Ref.: #22926]	L-serine ChEBI	-	growth
[Ref.: #22926]	L-threonine ChEBI	-	growth
[Ref.: #22924]	lactose ChEBI	+	growth
[Ref.: #22926]	lactose ChEBI	+	growth
[Ref.: #22923]	maltose ChEBI	+	builds acid from
[Ref.: #22926]	maltose ChEBI	+	growth
[Ref.: #22926]	mannitol ChEBI	+	growth
[Ref.: #22925]	myo-inositol ChEBI	-	growth
[Ref.: #22926]	nitrate ChEBI	-	reduction
[Ref.: #22925]	raffinose ChEBI	-	growth
[Ref.: #22926]	raffinose ChEBI	+/-	growth
[Ref.: #22925]	rna ChEBI	+	hydrolysis
[Ref.: #22924]	starch ChEBI	+	hydrolysis
[Ref.: #22925]	starch ChEBI	+	hydrolysis
[Ref.: #22925]	sucrose ChEBI	+/-	growth
[Ref.: #22924]	trehalose ChEBI	+	growth
[Ref.: #22926]	trehalose ChEBI	+	growth
[Ref.: #22925]	tween 20 ChEBI	+	hydrolysis
[Ref.: #22925]	tween 40 ChEBI	+	hydrolysis
[Ref.: #22925]	tween 60 ChEBI	+	hydrolysis
[Ref.: #22925]	tween 80 ChEBI	+	hydrolysis
[Ref.: #22923]	tyrosine ChEBI	+	hydrolysis
[Ref.: #22925]	tyrosine ChEBI	+/-	hydrolysis
[Ref.: #22926]	tyrosine ChEBI	+	hydrolysis
[Ref.: #22923]	urea ChEBI	+	hydrolysis
[Ref.: #22925]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #22926]		hydrogen sulfide ChEBI	yes
[Ref.: #22925]		melanin ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #22924]	gelatinase	-
[Ref.: #22926]	gelatinase	-
[Ref.: #22923]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10976]	Sample type/isolated from	bagasse

[Ref.: #22925]	Sample type/isolated from	sugar cane, self-heated sugar cane bagasse, filter press muds, sugar mills and soil

[Ref.: #45050]	Sample type/isolated from	Sugar cane bagasse
[Ref.: #45050]	Geographic location (country and/or sea, region)	Trinidad
[Ref.: #45050]	Country	Trinidad and Tobago
[Ref.: #45050]	Country ISO 3 Code	TTO
[Ref.: #45050]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Sugar cane bagasse
[Ref.: #67770]	Geographic location (country and/or sea, region)	Trinidad, West Indies
[Ref.: #67770]	Country	Trinidad and Tobago
[Ref.: #67770]	Country ISO 3 Code	TTO
[Ref.: #67770]	Continent	North America

[Ref.: #67771]	Sample type/isolated from	From sugar cane bagasse
[Ref.: #67771]	Geographic location (country and/or sea, region)	Trinidad, West Indies
[Ref.: #67771]	Country	Trinidad and Tobago
[Ref.: #67771]	Country ISO 3 Code	TTO
[Ref.: #67771]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Engineered	#Industrial	#Industrial production
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

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Global distribution of 16S sequence AJ251779 (>99% sequence identity) for Laceyella from Microbeatlas

Aquatic Samples	1320
Soil Samples	7909
Animal Samples	2143
Plant Samples	2298
Total Samples	13670

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10976]	Pathogenicity (human)	yes, in single cases
[Ref.: #10976]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermoactinomyces sacchari partial 16S rRNA gene	AJ251779	1377	ENA	37482 tax ID	*
[Ref.: #20218]	Thermoactinomyces sacchari KCTC 9790 16S ribosomal RNA gene, complete sequence	AF138737	1459	ENA	37482 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Laceyella sacchari DSM 43356	GCA_004343255	scaffold	GenBank	37482 tax ID
[Ref.: #66792]	Laceyella sacchari strain DSM 43356	37482.3	wgs	PATRIC	37482 tax ID	*
[Ref.: #66792]	Laceyella sacchari DSM 43356	2784746774	draft	JGI IMG/M	37482 tax ID	*
[Ref.: #66792]	Laceyella sacchari JCM 3137	2784132157	draft	JGI IMG/M	37482 tax ID	*

[Ref.: #10976]	GC-content	48 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Laceyella sacchari strain DSM 43356 PATRIC: 37482.3
[Ref.: #69480]	gram-positive	yes	88.879	yes
[Ref.: #69480]	anaerobic	no	98.737	yes
[Ref.: #69480]	halophile	no	89.261	no
[Ref.: #69480]	spore-forming	yes	95.62	yes
[Ref.: #69480]	glucose-util	yes	92.364	yes
[Ref.: #69480]	aerobic	yes	92.77	yes
[Ref.: #69480]	motile	no	80.201	no
[Ref.: #69480]	flagellated	no	90.796	no
[Ref.: #69480]	thermophile	yes	87.593	no
[Ref.: #69480]	glucose-ferment	no	92.538	no

Availability in culture collections External links

[Ref.: #10976]

Culture collection no.

DSM 43356, ATCC 27375, CBS 701.70, CUB 618, IFO 13920, KCTC 9790, NBRC 13920, NCIB 10486, NCTC 10721, CCUG 7967, CBS 7001.70, JCM 3137, BCRC 13341, CCM 3274, CECT 5332, IMET 9713, JCM 3214, KACC 20089, LMG 21518, LMG 21673, MTCC 955, NCIMB 10486, NRRL B-16981, PCM 2375, VKM Ac-1360, VTT E-011981, PCM 237

[Ref.: #85759]

SI-ID 45798

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermoflavimicrobium daqui sp. nov., a thermophilic microbe isolated from Moutai-flavour Daqu.	Li DN, Huang W, Qiu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.003528	2019	*
Phylogeny	Thermoactinomyces daqus sp. nov., a thermophilic bacterium isolated from high-temperature Daqu.	Yao S, Liu Y, Zhang M, Zhang X, Li H, Zhao T, Xin C, Xu L, Zhang B, Cheng C	Int J Syst Evol Microbiol	10.1099/ijs.0.055509-0	2013	*
Phylogeny	Laceyella tengchongensis sp. nov., a thermophile isolated from soil of a volcano.	Zhang J, Tang SK, Zhang YQ, Yu LY, Klenk HP, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.011767-0	2009	*
Phylogeny	DNA-DNA relatedness among Thermoactinomyces species: Thermoactinomyces candidus as a synonym of Thermoactinomyces vulgaris and Thermoactinomyces thalpophilus as a synonym of Thermoactinomyces sacchari.	Yoon JH, Shin YK, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-5-1905	2000	*
Phylogeny	Phylogenetic analysis of the genus Thermoactinomyces based on 16S rDNA sequences.	Yoon JH, Park YH	Int J Syst Evol Microbiol	10.1099/00207713-50-3-1081	2000	*

References

#10976

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43356

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#22923

Sarah N. Buss, Jocelyn A. Cole, George E. Hannett, Elizabeth J. Nazarian, Leah Nazarian, An Coorevits, Anita Van Landschoot, Paul De Vos, Peter Schumann, Kimberlee A. Musser, William J. Wolfgang: Hazenella coriacea gen. nov., sp. nov., isolated from clinical specimens. IJSEM 63: 4087 - 4093 2013 ( DOI 10.1099/ijs.0.050914-0 , PubMed 23728377 )

#22924

Jing Zhang, Shu-Kun Tang, Yu-Qin Zhang, Li-Yan Yu, Hans-Peter Klenk, Wen-Jun Li: Laceyella tengchongensis sp. nov., a thermophile isolated from soil of a volcano. IJSEM 60: 2226 - 2230 2010 ( DOI 10.1099/ijs.0.011767-0 , PubMed 19915116 )

#22925

Jung-Hoon Yoon, In-Gi Kim, Yong-Kook Shin, Yong-Ha Park: Proposal of the genus Thermoactinomyces sensu stricto and three new genera, Laceyella, Thermoflavimicrobium and Seinonella, on the basis of phenotypic, phylogenetic and chemotaxonomic analyses. IJSEM 55: 395 - 400 2005 ( DOI 10.1099/ijs.0.63203-0 , PubMed 15653907 )

#22926

Su Yao, Yang Liu, Mingjuan Zhang, Xin Zhang, Hong Li, Ting Zhao, Chunhui Xin, Ling Xu, Bolin Zhang, Chi Cheng: Thermoactinomyces daqus sp. nov., a thermophilic bacterium isolated from high-temperature Daqu. IJSEM 64: 206 - 210 2014 ( DOI 10.1099/ijs.0.055509-0 , PubMed 24048866 )

#45050 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7967

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85759

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45798.1 )

* These data were automatically processed and therefore are not curated

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Laceyella sacchari strain DSM 43356

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