Name: Paenibacillus sp. JCM 16163
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 161737

Type strain:

Species: Paenibacillus sp.

Culture col. no.: JCM 16163

Strain history: T. Iida YK5.

NCBI tax ID(s): 206394 (species)

Special Collections

Other strains from Paenibacillus sp.

Section

Paenibacillus sp. JCM 16163 is a spore-forming bacterium that was isolated from Soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Full Scientific Name (LPSN)	Paenibacillus Ash et al. 1994

Synonym

"Aerobacillus"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ukima Park, Itabashi-ku, Tokyo
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB091334 (>99% sequence identity) for Paenibacillus naphthalenovorans subclade from Microbeatlas

Aquatic Samples	379
Soil Samples	723
Animal Samples	515
Plant Samples	157
Total Samples	1774

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus sp. YK5 gene for 16S rRNA, partial sequence	AB091334	1514	GenBank ENA	206394 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus sp. YK5 JCM 16163	GCA_001312585	contig	GenBank ENA	206394 tax ID	*
[Ref.: #66792]	Paenibacillus sp. YK5 strain JCM 16163	206394.3	wgs	PATRIC	206394 tax ID	*
[Ref.: #66792]	Paenibacillus sp. JCM 16163	2734481908	draft	JGI IMG/M	206394 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus sp. YK5 strain JCM 16163 PATRIC: 206394.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus sp. YK5 strain JCM 16163 PATRIC: 206394.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	59.608	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.61	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.003	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	76.682	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	81.69	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.854	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 16163

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paenibacillus sp. YK5 strain JCM 16163

Paenibacillus sp. YK5 strain JCM 16163

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