Name: Paenibacillus sp. JCM 10914
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 161088

Type strain:

Species: Paenibacillus sp.

Culture col. no.: JCM 10914

Strain history: M. Ohkuma SM-XY60.

NCBI tax ID(s): 1236974 (species)

Other strains from Paenibacillus sp.

P. sp. py1325, DSM 100729, CCTCC AB 2015220, ... (type strain)
P. sp. DSM 26193, SCSIO NO257 (type strain)
P. sp. DSM 26239, SCSIO 04123 (type strain)
P. sp. 7022-2, DSM 103169 (type strain)
P. sp. C503-4, DSM 103174 (type strain)
P. sp. WL-12, DSM 596
P. sp. 39, DSM 1352
P. sp. 34, DSM 1354
P. sp. 35, DSM 1356
P. sp. 19, DSM 1358
P. sp. 8, DSM 1474
P. sp. 33, DSM 1480
P. sp. 44, DSM 1481
P. sp. M, DSM 1482
P. sp. 70, DSM 1487
P. sp. 32829, Shaw 32829, DSM 34, ATCC ...
P. sp. DSM 6358
P. sp. Mena 25/4-3, DSM 11456
P. sp. KM 8, DSM 13187
P. sp. DSM 16938, BR Br1, BR 1
P. sp. MG1, DSM 16939
P. sp. CNJ 934, DSM 17551
P. sp. Mis 2, DSM 18084
P. sp. ES2-W3b1, DSM 30623
P. sp. FR2-W5Cb, DSM 30701
P. sp. FR1-23, DSM 30729
P. sp. FR1-159, DSM 30735
P. sp. ES-119, DSM 30761
P. sp. RW12/1, DSM 30794
P. sp. KO_21, DSM 30817
P. sp. KO_27, DSM 30819
P. sp. P7/8_1, DSM 30930
P. sp. G3B2, DSM 26544
P. sp. G19, DSM 31027
P. sp. Root917, DSM 102488
P. sp. Root1311, DSM 102485
P. sp. Root444D2, DSM 102486
P. sp. Root52, DSM 102487
P. sp. Leaf72, DSM 102671
P. sp. DSM 102782, Soil 787
P. sp. Soil724D2, DSM 102783
P. sp. DSM 102784, Soil 522
P. sp. DSM 102785, Soil 766
P. sp. DSM 102786, Soil 750
P. sp. DSM 18123, Gsoil 3125
P. sp. TR 16, DSM 18335
P. sp. Hau-22, DSM 18486
P. sp. Hau-S1, DSM 18487
P. sp. FH2071, DSM 19167
P. sp. IDA0463, R-15841, DSM 19452, LMG ...
P. sp. IDA2114, R-15854, DSM 19453, LMG ...
P. sp. HM-78, 1/A/40A D14, DSM 25007
P. sp. R-19253, IDA10393, DSM 19454, LMG ...
P. sp. CCUG 21101
P. sp. CCUG 31548
P. sp. CCUG 31636
P. sp. CCUG 31950
P. sp. CCUG 31951
P. sp. CCUG 31952
P. sp. CCUG 33035
P. sp. CCUG 33087
P. sp. CCUG 37424
P. sp. CCUG 38850
P. sp. CCUG 39281
P. sp. CCUG 39709
P. sp. CCUG 41822
P. sp. CCUG 42663
P. sp. CCUG 43419
P. sp. CCUG 43509
P. sp. CCUG 44700
P. sp. CCUG 44942
P. sp. CCUG 45500
P. sp. CCUG 46573
P. sp. CCUG 46729
P. sp. CCUG 46730
P. sp. CCUG 47240
P. sp. CCUG 47241
P. sp. CCUG 47579
P. sp. CCUG 48121 A
P. sp. CCUG 48170
P. sp. CCUG 48401
P. sp. CCUG 48445
P. sp. CCUG 48741
P. sp. CCUG 49003
P. sp. CCUG 49779
P. sp. CCUG 50671
P. sp. CCUG 51243
P. sp. CCUG 51773
P. sp. CCUG 52200
P. sp. CCUG 53285
P. sp. CCUG 54436
P. sp. CCUG 55409
P. sp. CCUG 55696
P. sp. CCUG 56049
P. sp. CCUG 56119
P. sp. CCUG 56320
P. sp. CCUG 56321
P. sp. CCUG 56520
P. sp. CCUG 56582
P. sp. CCUG 57802
P. sp. CCUG 58047
P. sp. CCUG 58207
P. sp. CCUG 59125
P. sp. CCUG 70456
P. sp. KRS4C-6, DSM 19575
P. sp. MB 2039, R-7196, DSM 19614
P. sp. R-8460, DSM 19615, LMG 20245
P. sp. LnR5-29, DSM 21010
P. sp. BX7-16, DSM 21009
P. sp. 0.38, BF38, DSM 21177
P. sp. K25-8, DSM 109496
P. sp. YT-0011, DSM 21754
P. sp. YT-0001, DSM 21746
P. sp. YT-0039, DSM 21755
P. sp. KUDC1047, DSM 23624
P. sp. K26-11, DSM 109527
P. sp. Arbex 2021, R7W_B8_IIIA, DSM 110289
P. sp. Arbex 2035, YPD_RU13_A, DSM 110293
P. sp. cmc22, HW567, DSM 25994
P. sp. BF32, 0.32, DSM 21122
P. sp. BF92, DSM 21123
P. sp. GTL-23, DSM 23489
P. sp. DSM 24052, YIM 110206
P. sp. DSM 24053, YIM 110207
P. sp. CQ-X, DSM 24680
P. sp. DSM 26041, CPCC 100227
P. sp. DSM 26042, CPCC 100228
P. sp. DSM 26043, CPCC 100230
P. sp. DSM 26044, CPCC 100231
P. sp. SBD3-1, DSM 26094
P. sp. GD6, DSM 26108
P. sp. DSM 26240, SCSIO 04534
P. sp. DSM 26478, SCSIO DS0031
P. sp. K9-1, DSM 27096
P. sp. 32A, DSM 27214
P. sp. DSM 27606, YIM 121209
P. sp. 43, DSM 27965
P. sp. HB 12037, DSM 28015
P. sp. DSM 28699, YIM 97462
P. sp. DSM 29941, YIM 71082
P. sp. GM2, DSM 100384
P. sp. DSM 100505, TMCC 8228
P. sp. DSM 101508, CFH 50432
P. sp. FJAT-26390, DSM 101721
P. sp. DLS-01, DSM 101852
P. sp. DLS-05, DSM 101853
P. sp. 23TSA30-6, DSM 109041
P. sp. 281ISP30-2, DSM 109042
P. sp. JCM 13338
P. sp. JCM 13341
P. sp. JCM 13342
P. sp. JCM 13343
P. sp. JCM 16163
P. sp. JCM 16164
P. sp. JCM 16165
P. sp. JCM 16166
P. sp. JCM 18996
P. sp. JCM 19040
P. sp. JCM 20072, ATCC 7049, BCRC 11338, ...
P. sp. JCM 28274
P. sp. JCM 28311
P. sp. JCM 28313
P. sp. JCM 28314
P. sp. JCM 28315
P. sp. JCM 30052, KCTC 33553
P. sp. JCM 31816, MTCC 12461
P. sp. JCM 32208
P. sp. JCM 9143, ATCC 21783, BCRC 13842, ...
P. sp. JCM 9795
P. sp. JCM 9796
P. sp. V9, DSM 26726, VKM B-2647
P. sp. 1-49, DSM 28492
P. sp. FJAT-27264, DSM 101736
P. sp. FJAT-27812, DSM 101737
P. sp. DSM 101739, CPCC 100627
P. sp. DSM 102193, CPCC 100836
P. sp. DSM 102196, CPCC 100843
P. sp. DSM 102197, CPCC 100793
P. sp. 7038-1, DSM 103170
P. sp. 7028, DSM 103171
P. sp. DY2-1, DSM 103173
P. sp. Turin101221_C2; C2a, DSM 113555
P. sp. A9, DSM 113766
P. sp. Turin10- W06, DSM 113929

Section

Paenibacillus sp. JCM 10914 is a mesophilic bacterium that was isolated from Gut of the soil-feeding termite Sinocapritermes mushae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Full Scientific Name (LPSN)	Paenibacillus Ash et al. 1994

Synonym

"Aerobacillus"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

	Enzymes	Enzyme	EC number
[Ref.: #67770]		Xylanase	3.2.1.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Gut of the soil-feeding termite Sinocapritermes mushae
[Ref.: #67770]	Host species	Sinocapritermes mushae
[Ref.: #67770]	Geographic location (country and/or sea, region)	Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB046581 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	37
Soil Samples	432
Animal Samples	92
Plant Samples	117
Total Samples	678

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus sp. SM-XY60 gene for 16S rRNA, partial sequence	AB046581	1375	ENA	1236974 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus sp. JCM 10914	GCA_000509425	contig	GenBank	1236974 tax ID
[Ref.: #66792]	Paenibacillus sp. JCM 10914	GCA_001315105	contig	GenBank	1236974 tax ID	*
[Ref.: #66792]	Paenibacillus sp. JCM 10914	1236974.5	wgs	PATRIC	1236974 tax ID	*
[Ref.: #66792]	Paenibacillus sp. JCM 10914	1236974.4	wgs	PATRIC	1236974 tax ID	*
[Ref.: #66792]	Paenibacillus sp. JCM 10914	2576861701	draft	JGI IMG/M	1236974 tax ID	*

[Ref.: #67770]	GC-content	48.7-49.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	48.6 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus sp. JCM 10914 PATRIC: 1236974.5
[Ref.: #69480]	motile	yes	90.546	no
[Ref.: #69480]	gram-positive	yes	77.77	no
[Ref.: #69480]	anaerobic	no	97.925	no
[Ref.: #69480]	aerobic	yes	83.87	no
[Ref.: #69480]	halophile	no	77.24	no
[Ref.: #69480]	spore-forming	yes	96.194	no
[Ref.: #69480]	thermophile	no	98.972	no
[Ref.: #69480]	glucose-util	yes	88.436	no
[Ref.: #69480]	flagellated	yes	78.498	no
[Ref.: #69480]	glucose-ferment	no	86.104	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 10914

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of the Alkaliphilic and Xylanolytic Paenibacillus sp. Strain JCM 10914, Isolated from the Gut of a Soil-Feeding Termite.	Ohkuma M, Yuki M, Oshima K, Suda W, Oshida Y, Kitamura K, Iida T, Hattori M	Genome Announc	10.1128/genomeA.01144-13	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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