Strain identifier
BacDive ID: 161737
Type strain:
Species: Paenibacillus sp.
Strain history: T. Iida YK5.
NCBI tax ID(s): 206394 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161737
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus sp. JCM 16163 is a spore-forming, mesophilic, motile bacterium that was isolated from Soil.
NCBI tax id
- NCBI tax id: 206394
- Matching level: species
strain history
- @ref: 67770
- history: T. Iida YK5.
doi: 10.13145/bacdive161737.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Caryophanales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 93.33 | |
69480 | 99.999 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | yes | 100 |
69481 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil
- geographic location: Ukima Park, Itabashi-ku, Tokyo
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_331.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_231;97_253;98_282;99_331&stattab=map
- Last taxonomy: Paenibacillus naphthalenovorans subclade
- 16S sequence: AB091334
- Sequence Identity:
- Total samples: 1774
- soil counts: 723
- aquatic counts: 379
- animal counts: 515
- plant counts: 157
Sequence information
16S sequences
- @ref: 67770
- description: Paenibacillus sp. YK5 gene for 16S rRNA, partial sequence
- accession: AB091334
- length: 1514
- database: ena
- NCBI tax ID: 206394
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Paenibacillus sp. YK5 JCM 16163 | GCA_001312585 | contig | ncbi | 206394 |
66792 | Paenibacillus sp. YK5 strain JCM 16163 | 206394.3 | wgs | patric | 206394 |
66792 | Paenibacillus sp. JCM 16163 | 2734481908 | draft | img | 206394 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | yes | 87.414 | no |
gram-positive | yes | 77.554 | no |
anaerobic | no | 98.723 | no |
aerobic | yes | 91.68 | no |
halophile | no | 95.46 | no |
spore-forming | yes | 93.52 | no |
glucose-util | yes | 89.451 | no |
flagellated | yes | 79.829 | no |
thermophile | no | 90.102 | yes |
glucose-ferment | no | 93.845 | no |
External links
@ref: 67770
culture collection no.: JCM 16163
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |