Paenibacillus paridis (DSM 100729, CCTCC AB 2015220, LMG 29068)

Name: Paenibacillus paridis (DSM 100729, CCTCC AB 2015220, LMG 29068)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159373

Type strain

Strain Designation py1325

Culture col. no. DSM 100729 CCTCC AB 2015220 LMG 29068 py1325

NCBI tax ID(s) 2583376 58172

Special Collections DSMZ

Links

Paenibacillus paridis py1325 is a mesophilic prokaryote that was isolated from the rhizome of Paris polyphylla var. yunnanensis.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406993

DSM 100729

@ref 20215

Last LPSN update 2025-12-16 10:08:14

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus paridis

Full scientific name Paenibacillus paridis Wang et al. 2020

Morphology

Cell morphology

@ref	Motility	Confidence
125439		90.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
66196	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
66196	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	92.9

Spore formation

@ref	Spore formation	Confidence
125439		92.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
66196	the rhizome of Paris polyphylla var. yunnanensis	Paris polyphylla	Yunnan Province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence MK956104 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	68
Soil Samples	626
Animal Samples	103
Plant Samples	33
Total Samples	830

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM634582v1 assembly for Paenibacillus paridis py1325	scaffold	GCA_006345825	2583376.3	2904113452	2583376	48.36

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
66196	Paenibacillus paridis strain py1325 16S ribosomal RNA gene, partial sequence	MK956104	1450		2583376

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus paridis py1325
NCBI: GCA_006345825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	92.20	no
125439	motility	BacteriaNetⓘ	yes	90.20	no
125439	gram_stain	BacteriaNetⓘ	variable	82.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus paridis py1325
NCBI: GCA_006345825.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	64.99	no
125438	anaerobic	anaerobicⓘ	no	96.05	no
125438	aerobic	aerobicⓘ	yes	71.34	no
125438	spore-forming	spore-formingⓘ	yes	87.89	no
125438	thermophilic	thermophileⓘ	no	87.76	yes
125438	flagellated	motile2+ⓘ	yes	83.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis.	Wang M, Jiang XW, Tang SK, Zhi XY, Yang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003997	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66196	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100729
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Paenibacillus paridis (DSM 100729, CCTCC AB 2015220, LMG 29068)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_006345825

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media