Name: Paenibacillus paridis py1325
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159373

Type strain:

Species: Paenibacillus paridis

Strain Designation: py1325

Culture col. no.: DSM 100729, CCTCC AB 2015220, LMG 29068

Strain history: <- S.-K. Tang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; py1325 <- L.-L. Yang

NCBI tax ID(s): 58172 (species)

SI-ID 406993

DSM 100729

Section

Paenibacillus paridis py1325 is a spore-forming, mesophilic, motile bacterium that was isolated from the rhizome of Paris polyphylla var. yunnanensis.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus paridis**
	Full Scientific Name (LPSN)	Paenibacillus paridis Wang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %98.395

Information on culture and growth conditions Culture and growth conditions

[Ref.: #66196]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #66196]

Culture medium growth

[Ref.: #66196]

Culture medium link

Medium recipe at MediaDive

[Ref.: #66196]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #66196]			growth	30 °C

[Ref.: #66196]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #66196]	Sample type/isolated from	the rhizome of Paris polyphylla var. yunnanensis
[Ref.: #66196]	Host species	Paris polyphylla
[Ref.: #66196]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #66196]	Country	China
[Ref.: #66196]	Country ISO 3 Code	CHN
[Ref.: #66196]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MK956104 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	68
Soil Samples	626
Animal Samples	103
Plant Samples	33
Total Samples	830

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66196]	Paenibacillus sp. strain py1325 16S ribosomal RNA gene, partial sequence	MK956104	1450	ENA	2583376 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus paridis py1325	GCA_006345825	scaffold	GenBank	2583376 tax ID	*
[Ref.: #66792]	Paenibacillus paridis py1325	2904113452	draft	JGI IMG/M	2583376 tax ID	*
[Ref.: #66792]	Paenibacillus sp. py1325	2583376.3	wgs	PATRIC	2583376 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus paridis py1325 NCBI: GCA_006345825.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus paridis py1325 NCBI: GCA_006345825.1
[Ref.: #69480]	motile	yes	89.461	no
[Ref.: #69480]	flagellated	yes	83.622	no
[Ref.: #69480]	gram-positive	yes	75.72	no
[Ref.: #69480]	anaerobic	no	98.487	no
[Ref.: #69480]	aerobic	yes	86.044	no
[Ref.: #69480]	halophile	no	94.036	no
[Ref.: #69480]	spore-forming	yes	91.209	no
[Ref.: #69480]	thermophile	no	99.717	yes
[Ref.: #69480]	glucose-util	yes	89.833	no
[Ref.: #69480]	glucose-ferment	no	87.226	no

Availability in culture collections External links

[Ref.: #66196]

Culture collection no.

DSM 100729, CCTCC AB 2015220, LMG 29068

[Ref.: #111868]

SI-ID 406993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus paridis sp. nov., an endophytic bacterial species isolated from the root of Paris polyphylla Smith var. yunnanensis.	Wang M, Jiang XW, Tang SK, Zhi XY, Yang LL	Int J Syst Evol Microbiol	10.1099/ijsem.0.003997	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66196

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100729

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111868

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406993.1 )

* These data were automatically processed and therefore are not curated

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