Cite this strain

Paenibacillus sp. (JCM 9796)

Name: Paenibacillus sp. (JCM 9796)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 166067

Type strain

Culture col. no. JCM 9796

NCBI tax ID(s) 1298602

Special Collections JCM

History T. Kudo N7.

Links

JCM 9796 is a mesophilic prokaryote that was isolated from Soil in Saitama Pref.,by biphenyl enrichment.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 131303

JCM 9796

@ref 20215

Last LPSN update 2026-02-09 11:40:15

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Full scientific name Paenibacillus Ash et al. 1994

Synonyms (1)

"Aerobacillus"

Morphology

Cell morphology

@ref	Motility	Confidence
125439		92.3

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	90.2

Spore formation

@ref	Spore formation	Confidence
125439		95.7

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil in Saitama Pref.,by biphenyl enrichment	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID
66792	ASM131256v1 assembly for Paenibacillus sp. JCM 9796	contig	GCA_001312565	1298602.3	2734481907	1298602

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus sp. JCM 9796
NCBI: GCA_001312565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.70	no
125439	motility	BacteriaNetⓘ	yes	92.30	no
125439	gram_stain	BacteriaNetⓘ	variable	87.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	90.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus sp. JCM 9796
PATRIC: 1298602.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	56.50	no
125438	anaerobic	anaerobicⓘ	no	93.03	no
125438	spore-forming	spore-formingⓘ	yes	87.87	no
125438	aerobic	aerobicⓘ	yes	77.94	no
125438	thermophilic	thermophileⓘ	no	89.63	yes
125438	flagellated	motile2+ⓘ	yes	76.96	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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