Cite this strain

Vibrio sp. (JCM 10884)

Name: Vibrio sp. (JCM 10884)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161083

Type strain

Culture col. no. JCM 10884

NCBI tax ID(s) 678

Special Collections JCM

History JCM <-- K. Tajima Sk-1.

Links

JCM 10884 is a bacterium that was isolated from Coelomic fluid of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Shikabe.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 393557

JCM 10884

@ref 20215

Last LPSN update 2026-05-29 08:44:36

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Full scientific name Vibrio Pacini 1854 (Approved Lists 1980)

Synonyms (3)

Allomonas
Beneckea
Lucibacterium

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	20

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Coelomic fluid of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Shikabe	Strongylocentrotus intermedium	Hokkaido	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC506146 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	6823
Soil Samples	235
Animal Samples	1389
Plant Samples	46
Total Samples	8493

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Vibrio sp. JCM 10884 gene for 16S ribosomal RNA, partial sequence	LC506146	1478		678

GC content

@ref	GC-content (mol%)	Method
67770	44.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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