Cite this strain

Vibrio sp. (JCM 10883)

Name: Vibrio sp. (JCM 10883)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 161082

Type strain

Culture col. no. JCM 10883

NCBI tax ID(s) 678

Special Collections JCM

Links

JCM 10883 is a psychrophilic prokaryote that was isolated from Body surface of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Date.

psychrophilic 16S sequence

Name and taxonomic classification

SI-ID 131475

JCM 10883

@ref 20215

Last LPSN update 2025-12-16 10:08:39

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Full scientific name Vibrio Pacini 1854 (Approved Lists 1980)

Synonyms (4)

Allomonas
"Allomonas"
Lucibacterium
Beneckea

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	20	psychrophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67770	Body surface of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Date	Strongylocentrotus intermedium	Hokkaido	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC506145 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	5115
Soil Samples	160
Animal Samples	960
Plant Samples	30
Total Samples	6265

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Vibrio sp. JCM 10883 gene for 16S ribosomal RNA, partial sequence	LC506145	1477		678

GC content

@ref	GC-content (mol%)	Method
67770	43.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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