Strain identifier
BacDive ID: 161083
Type strain: 
Species: Vibrio sp.
Strain history: K. Tajima Sk-1.
NCBI tax ID(s): 678 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 161083
keywords: 16S sequence, Bacteria, psychrophilic
description: Vibrio sp. JCM 10884 is a psychrophilic bacterium that was isolated from Coelomic fluid of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Shikabe.
NCBI tax id
- NCBI tax id: 678
- Matching level: species
strain history
- @ref: 67770
- history: K. Tajima Sk-1.
doi: 10.13145/bacdive161083.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio sp.
- full scientific name: Vibrio Pacini 1854 (Approved Lists 1980)
synonyms
@ref synonym 20215 Beneckea 20215 Allomonas 20215 Lucibacterium
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales
family: Vibrionaceae
genus: Vibrio
species: Vibrio sp.
full scientific name: Vibrio sp.
type strain: no
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Coelomic fluid of diseased sea urchin Strongylocentrotus intermedium at Fisheries Breeding Centers in Shikabe
- host species: Strongylocentrotus intermedium
- geographic location: Hokkaido
- country: Japan
- origin.country: JPN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_498.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_361;98_409;99_498&stattab=map
- Last taxonomy: Vibrio
- 16S sequence: LC506146
- Sequence Identity:
- Total samples: 8493
- soil counts: 235
- aquatic counts: 6823
- animal counts: 1389
- plant counts: 46
Sequence information
16S sequences
- @ref: 67770
- description: Vibrio sp. JCM 10884 gene for 16S ribosomal RNA, partial sequence
- accession: LC506146
- length: 1478
- database: ena
- NCBI tax ID: 678
GC content
- @ref: 67770
- GC-content: 44.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 67770
culture collection no.: JCM 10884
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |