Cite this strain

Vibrio sp. (JCM 18905)

Name: Vibrio sp. (JCM 18905)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162332

Type strain

Culture col. no. JCM 18905

NCBI tax ID(s) 1298600

Special Collections JCM

Links

JCM 18905 is a mesophilic prokaryote that was isolated from Tetrodotoxin-bearing scavenging gastropod Nassarius glans.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 131326

JCM 18905

@ref 20215

Last LPSN update 2025-12-16 10:08:57

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Full scientific name Vibrio Pacini 1854 (Approved Lists 1980)

Synonyms (4)

Allomonas
"Allomonas"
Lucibacterium
Beneckea

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100
125439	negative	99.2

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		99.1

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species
67770	Tetrodotoxin-bearing scavenging gastropod Nassarius (Alectrion) glans	Nassarius

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM69505v1 assembly for Vibrio sp. JCM 18905	contig	GCA_000695055	1298600.3	2579778801	1298600	18.78
66792	ASM131520v1 assembly for Vibrio sp. JCM 18905	contig	GCA_001315205	1298600.4	8033295038	1298600	13.6

Genome browser: GCA_000695055

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio sp. JCM 18905
NCBI: GCA_001315205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.10	no
125439	motility	BacteriaNetⓘ	yes	77.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio sp. JCM 18905
PATRIC: 1298600.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	97.59	no
125438	spore-forming	spore-formingⓘ	no	84.82	no
125438	aerobic	aerobicⓘ	no	64.73	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	88.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Vibrio sp. Strains Isolated from Tetrodotoxin-Bearing Scavenging Gastropod.	Kudo T, Kawauchi A, Nakahara T, Zhang X, Taniyama S, Takatani T, Arakawa O, Oshima K, Suda W, Kitamura K, Iida T, Iino T, Inoue T, Hongoh Y, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00623-14	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio sp. (JCM 18905)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000695055

Genome-based predictions

Predictions

Literature

Literature

References

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