Name: Vibrio sp. IC18_D5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 159163

Type strain:

Species: Vibrio sp.

Strain Designation: IC18_D5

Culture col. no.: DSM 107313

Strain history: <- W.M. Ihua, University College Cork, Microbiology; IC18_D5 <-

NCBI tax ID(s): 678 (species)

SI-ID 407620

DSM 107313

Other strains from Vibrio sp.

V. sp. DSM 12610, HALO 156
V. sp. CH 1278, DSM 12895
V. sp. CH 1285, DSM 12896
V. sp. CH 1287, DSM 12897
V. sp. CH 1326, DSM 12898
V. sp. CH 1327, DSM 12899
V. sp. CH 1356, DSM 12900
V. sp. CH 1357, DSM 12901
V. sp. CH 1380, DSM 12903
V. sp. CH 1381, DSM 12904
V. sp. B-11245, VNB-15, DSM 26054
V. sp. CCUG 21293
V. sp. CCUG 31602
V. sp. CCUG 31603
V. sp. CCUG 46764
V. sp. CCUG 46976
V. sp. CCUG 53234
V. sp. CCUG 61202
V. sp. CCUG 61203
V. sp. SW9, DSM 24596, CAIM 722
V. sp. P095, DSM 108851
V. sp. R5, DSM 108852
V. sp. P101TypB, DSM 108853
V. sp. 60.18M, DSM 108965
V. sp. 65.7M, DSM 108966
V. sp. PO47 TypC, DSM 110182
V. sp. JCM 10713
V. sp. JCM 10883
V. sp. JCM 10884
V. sp. JCM 14512
V. sp. JCM 17072
V. sp. JCM 17658, FERM P-14737
V. sp. JCM 18904
V. sp. JCM 18905
V. sp. JCM 19052
V. sp. JCM 19053
V. sp. JCM 19061
V. sp. JCM 19063
V. sp. JCM 19064
V. sp. JCM 19234
V. sp. JCM 19235
V. sp. JCM 19236
V. sp. JCM 19237
V. sp. JCM 21396, IAM 14914
V. sp. JCM 21397, IAM 14915
V. sp. JCM 21398, IAM 14916
V. sp. JCM 21399, IAM 14917
V. sp. JCM 3732
V. sp. 10N.261.49.E11, DSM 113773
V. sp. 10N.261.55.A7, DSM 113774

Section

Vibrio sp. IC18_D5 is a mesophilic bacterium that was isolated from decaying Ascophyllum nodosum<\i>.

mesophilic

16S sequence

Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

Last LPSN update 14-12-2023 (DD-MM-YYYY)

Domain "Bacteria"

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Full Scientific Name (LPSN) Vibrio Pacini 1854 (Approved Lists 1980)

Synonym Beneckea

Synonym Allomonas

Synonym Lucibacterium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65986] Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #65986] Culture medium growth

[Ref.: #65986] Culture medium link Medium recipe at MediaDive

[Ref.: #65986] Culture medium composition expand / minimize

Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
Composition:
NaCl 19.4 g/l
Agar 15.0 g/l
MgCl2 8.8 g/l
Peptone 5.0 g/l
Na2SO4 3.24 g/l
CaCl2 1.8 g/l
Yeast extract 1.0 g/l
KCl 0.55 g/l
NaHCO3 0.16 g/l
Fe(III) citrate 0.1 g/l
KBr 0.08 g/l
SrCl2 0.034 g/l
H3BO3 0.022 g/l
Na2HPO4 0.008 g/l
Na-silicate 0.004 g/l
NaF 0.0024 g/l
(NH4)NO3 0.0016 g/l
Distilled water

[Ref.: #65986] Culture medium

SEA WATER AGAR (DSMZ Medium 246)

[Ref.: #65986] Culture medium growth

[Ref.: #65986] Culture medium link Medium recipe at MediaDive

[Ref.: #65986] Culture medium composition expand / minimize

Name: SEA WATER AGAR (DSMZ Medium 246)
Composition:
Agar 20.0 g/l
Peptone 10.0 g/l
Beef extract 10.0 g/l
Tap water
Sea water

Temperatures Kind of temperature Temperature

[Ref.: #65986] growth 28 °C

[Ref.: #65986] Temperature range mesophilic

Information on physiology and metabolism Physiology and metabolism

Metabolite utilization Metabolite Utilization activity Kind of utilization tested

[Ref.: #68369] adipate ChEBI - assimilation * from API 20NE

[Ref.: #68369] arginine ChEBI + hydrolysis * from API 20NE

[Ref.: #68369] D-glucose ChEBI + assimilation * from API 20NE

[Ref.: #68369] D-glucose ChEBI + fermentation * from API 20NE

[Ref.: #68369] D-mannitol ChEBI - assimilation * from API 20NE

[Ref.: #68369] D-mannose ChEBI - assimilation * from API 20NE

[Ref.: #68369] decanoate ChEBI - assimilation * from API 20NE

[Ref.: #68369] esculin ChEBI + hydrolysis * from API 20NE

[Ref.: #68369] gelatin ChEBI - hydrolysis * from API 20NE

[Ref.: #68369] gluconate ChEBI + assimilation * from API 20NE

[Ref.: #68369] L-arabinose ChEBI + assimilation * from API 20NE

[Ref.: #68369] malate ChEBI + assimilation * from API 20NE

[Ref.: #68369] maltose ChEBI + assimilation * from API 20NE

[Ref.: #68369] N-acetylglucosamine ChEBI - assimilation * from API 20NE

[Ref.: #68369] nitrate ChEBI + reduction * from API 20NE

[Ref.: #68369] tryptophan ChEBI + energy source * from API 20NE

[Ref.: #68369] urea ChEBI - hydrolysis * from API 20NE

Only first 10 entries are displayed. Click here to see all.

Metabolite production Metabolite Production

[Ref.: #68369] indole ChEBI yes * from API 20NE

Physiological tests Metabolite Indole test

[Ref.: #68369] indole ChEBI + * from API 20NE

Enzymes Enzyme Enzyme activity EC number

[Ref.: #68369] arginine dihydrolase + 3.5.3.6 * from API 20NE

[Ref.: #68369] beta-glucosidase + 3.2.1.21 * from API 20NE

[Ref.: #68369] cytochrome oxidase + 1.9.3.1 * from API 20NE

[Ref.: #68369] gelatinase - * from API 20NE

[Ref.: #68369] urease - 3.5.1.5 * from API 20NE

API® 20NE: Note that the displayed test results represent raw data and therefore may deviate!

API ID Reduction of nitratesNO3 Indole productionTRP Fermentation of D-glucoseGLU_ Ferm Arginine dihydrolaseADH (Arg) Urease/urea hydrolysisURE Esculin hydrolysis/beta-GlucosidaseESC Gelatinase/gelatin hydrolysisGEL beta-GalactosidasePNPG Assimilation of D-glucoseGLU_ Assim Assimilation of L-arabinoseARA Assimilation of D-mannoseMNE Assimilation of D-mannitolMAN Assimilation of N-acetyl-glucosamineNAG Assimilation of maltoseMAL Assimilation of gluconateGNT Assimilation of capric acidCAP Assimilation adipic acidADI Assimilation of malic acidMLT Assimilation of citric acidCIT Assimilation of phenyl-acetic acidPAC Cytochrome oxidaseOX

[Ref.: #65986] 24719 + + + + - + - + + + - - - + + - - + + - +

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65986] Sample type/isolated from decaying Ascophyllum nodosum<\i>

[Ref.: #65986] Host species Ascophyllum

[Ref.: #65986] Geographic location (country and/or sea, region) Galway Bay (53° 14' 40'' N, 08° 58' 02'' W)

[Ref.: #65986] Country Ireland

[Ref.: #65986] Country ISO 3 Code IRL

[Ref.: #65986] Continent Europe

* marker position based on {}

Isolation sources categories

#Host #Algae #Brown Algae

#Environmental #Microbial community #Decomposing algae

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Sequence accession description Seq. accession number Sequence length (bp) Sequence database Associated NCBI tax ID

[Ref.: #65986] Vibrio oceanisediminis strain IC18_D5 16S ribosomal RNA gene, partial sequence KY225099.1 705
ENA
1550030 tax ID

Availability in culture collections External links

[Ref.: #65986] Culture collection no. DSM 107313

[Ref.: #111666] SI-ID 407620 *

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65986 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107313

#68369 Automatically annotated from API 20NE .

#111666 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407620.1 )

* These data were automatically processed and therefore are not curated

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