Vibrio sp. (DSM 107313, IC18_D5)

Name: Vibrio sp. (DSM 107313, IC18_D5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 159163

Type strain

Strain Designation IC18_D5

Culture col. no. DSM 107313 IC18_D5

NCBI tax ID(s) 678

Special Collections DSMZ

Links

IC18_D5 is a mesophilic prokaryote that was isolated from decaying Ascophyllum nodosum<\i>.

mesophilic 16S sequence

Name and taxonomic classification

SI-ID 407620
DSM 107313

@ref 20215

Last LPSN update 2025-12-16 10:08:11

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Full scientific name Vibrio Pacini 1854 (Approved Lists 1980)

Synonyms (4)
Allomonas
"Allomonas"
Lucibacterium
Beneckea

Morphology

Culture and growth conditions

Culture medium
@ref Name Growth Medium link Composition
65986 MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Medium recipe at MediaDive Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
65986 SEA WATER AGAR (DSMZ Medium 246) Medium recipe at MediaDive Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water

Culture temp
@ref Growth Type Temperature (°C) Range
65986 positive growth 28 mesophilic

Physiology and metabolism

Metabolite utilization
@ref Chebi-ID Metabolite Utilization activity Kind of utilization tested
68369 17128 ChEBI adipate - assimilation from API 20NE
68369 29016 ChEBI arginine + hydrolysis from API 20NE
68369 17634 ChEBI D-glucose + assimilation from API 20NE
68369 17634 ChEBI D-glucose + fermentation from API 20NE
68369 16899 ChEBI D-mannitol - assimilation from API 20NE
68369 16024 ChEBI D-mannose - assimilation from API 20NE
68369 27689 ChEBI decanoate - assimilation from API 20NE
68369 4853 ChEBI esculin + hydrolysis from API 20NE
68369 5291 ChEBI gelatin - hydrolysis from API 20NE
68369 24265 ChEBI gluconate + assimilation from API 20NE
68369 30849 ChEBI L-arabinose + assimilation from API 20NE
68369 25115 ChEBI malate + assimilation from API 20NE
68369 17306 ChEBI maltose + assimilation from API 20NE
68369 59640 ChEBI N-acetylglucosamine - assimilation from API 20NE
68369 17632 ChEBI nitrate + reduction from API 20NE
68369 27897 ChEBI tryptophan + energy source from API 20NE
68369 16199 ChEBI urea - hydrolysis from API 20NE

Metabolite production
@ref Chebi-ID Metabolite Production
68369 35581 ChEBI indole from API 20NE

Metabolite tests
@ref Chebi-ID Metabolite Indole test
68369 35581 ChEBI indole + from API 20NE

Enzymes
@ref Value Activity Ec
68369 arginine dihydrolase + 3.5.3.6 from API 20NE
68369 beta-glucosidase + 3.2.1.21 from API 20NE
68369 cytochrome oxidase + 1.9.3.1 from API 20NE
68369 gelatinase - from API 20NE
68369 urease - 3.5.1.5 from API 20NE

API 20NE

@ref Reduction of nitratesNO3 TRP GLU_ Ferm ADH (Arg) URE ESC GEL PNPG GLU_ Assim ARA MNE MAN NAG MAL GNT CAP ADI MLT CIT PAC OX

65986 + + + + - + - + + + - - - + + - - + + - +

Isolation, sampling and environmental information

Isolation source categories
Cat1 Cat2 Cat3
#Host #Algae #Brown Algae
#Environmental #Microbial community #Decomposing algae

Isolation
@ref Sample type Host species Geographic location Country Country ISO 3 Code Continent
65986 decaying Ascophyllum nodosum<\i> Ascophyllum Galway Bay (53° 14' 40'' N, 08° 58' 02'' W) Ireland IRL Europe

Interaction and safety

Sequence information

16S sequences
@ref Description Accession Length Database NCBI tax ID
65986 Vibrio oceanisediminis strain IC18_D5 16S ribosomal RNA gene, partial sequence KY225099.1 705
1550030

Genome-based predictions

Literature

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65986 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107313

#68369 Automatically annotated from API 20NE .

#126262 A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Vibrio sp. (DSM 107313, IC18_D5)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

Genome-based predictions

Literature

References

BacDive

Help

Social Media

@ref	Name	Growth	Medium link	Composition
65986	MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)		Medium recipe at MediaDive	Name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f) Composition: NaCl 19.4 g/l Agar 15.0 g/l MgCl2 8.8 g/l Peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
65986	SEA WATER AGAR (DSMZ Medium 246)		Medium recipe at MediaDive	Name: SEA WATER AGAR (DSMZ Medium 246) Composition: Agar 20.0 g/l Peptone 10.0 g/l Beef extract 10.0 g/l Tap water Sea water

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	+	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	+	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	+	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

@ref	Value	Activity	Ec
68369	arginine dihydrolase	+	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

Cat1	Cat2	Cat3
#Host	#Algae	#Brown Algae
#Environmental	#Microbial community	#Decomposing algae

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65986	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107313
#68369	Automatically annotated from API 20NE .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )